View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4948_low_1 (Length: 503)
Name: NF4948_low_1
Description: NF4948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4948_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 10 - 487
Target Start/End: Complemental strand, 12697125 - 12696643
Alignment:
| Q |
10 |
catcatcaatattacaaatacgaatgcattgctattttggacatttagtcatatttataggcttatattttgtcattttatgttgtactattaacctgaa |
109 |
Q |
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| T |
12697125 |
catcatcaatattacaaatacggatgcattgctattttggacatttagtcatatttatagacttatattttgtcattttatattgtactgttaacctgaa |
12697026 |
T |
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| Q |
110 |
tgatgcgagtttatt-cacaaattcannnnnnnnnnnnnat-atagattttaaatttgtattgtatcgctttagttgttattatctctagtttgtataaa |
207 |
Q |
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| T |
12697025 |
tgatgcgagtttatttcacaaattcattttttttttttttttatagattttgaatttgtattgtatctctttagttgttattatctttagtttgtataaa |
12696926 |
T |
|
| Q |
208 |
ttaagcatagtctcatcacc-----acctttag-tgacgaagaaaccaacattaagaatgtcaacgagatcgacaagccattgttgaactagacattata |
301 |
Q |
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||||||||||||||| ||| || || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12696925 |
ttaagcatagtctcaccactttcatactttcaggtgacgaagaaaccaacattaagaatgtcaacgagatcgacaagccattgttgaactagacattata |
12696826 |
T |
|
| Q |
302 |
aacaactatgtgagaagtcaccactgttgtcatcttattacatcctcccacattgccgcatccattaaggcagcaaacaatcctgacattgttgattata |
401 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
12696825 |
aacaattatgtgagaagtcaccactgttgtcatcttattacatcc---cacattgccgcatccattaaggcagcaaacgatccggacattgttgattata |
12696729 |
T |
|
| Q |
402 |
atgatgaccgatatgagttgcctaaggaggaaagtccttgtatgtgtgacacattttgctattataaattgtatcgaaggtttatc |
487 |
Q |
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| T |
12696728 |
atgatgaccgatatgagttgcctaaggaggaaagtccttgtatgtgtgacacattttgctattatagattgtatcgaaggtttatc |
12696643 |
T |
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