View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4948_low_11 (Length: 241)
Name: NF4948_low_11
Description: NF4948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4948_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 35952768 - 35952992
Alignment:
| Q |
1 |
ccatgaaaatgattaagctttgataatattattgtcttgcacaggtggacttgatatgtatgcggattttccttcctataacaaagaaaatcaagcagta |
100 |
Q |
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| T |
35952768 |
ccatgaaaatgattaagctttgataatattattgtcttgcacaggtggacttgatatgtatgcggatttttcttcctataacaaagaaaatcaagcagta |
35952867 |
T |
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| Q |
101 |
caatcaactcttgaaccagaggttgttaaacacaagcagatcctcaactccgaaggtttgtttcttcatcttcagccaaaagtatatattacttatcaat |
200 |
Q |
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| T |
35952868 |
caatcaactcttgaaccagaggttgttaaacacaagcagatcctcaactccgaaggtttgtttcttcatcttcagccaaaagtatatattacttatcaat |
35952967 |
T |
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| Q |
201 |
agcttttttgaatcatcatgaaact |
225 |
Q |
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| T |
35952968 |
agcttttttgaatcatcatgaaact |
35952992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 22 - 219
Target Start/End: Original strand, 35972744 - 35972941
Alignment:
| Q |
22 |
gataatattattgtcttgcacaggtggacttgatatgtatgcggattttccttcctataacaaagaaaatcaagcagtacaatcaactcttgaaccagag |
121 |
Q |
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| T |
35972744 |
gataatattattgttatgaacaggtggacttgatatgtatgctgcgttttcttcctctatcaaagaaaatcaagcagcgcaatcaactcttgaatcagac |
35972843 |
T |
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| Q |
122 |
gttgttaaacacaagcagatcctcaactccgaaggtttgtttcttcatcttcagccaaaagtatatattacttatcaatagcttttttgaatcatcat |
219 |
Q |
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| T |
35972844 |
attgttaaatacaagcagatactcaacatcgaaggtttgtttcttcatcttcattgaaaagtatatattacttataaataacttttttgaatcatcat |
35972941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 35979900 - 35979988
Alignment:
| Q |
21 |
tgataatattattgtcttgcacaggtggacttgatatgtatgcggattttccttcctataacaaagaaaatcaagcagtacaatcaact |
109 |
Q |
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| T |
35979900 |
tgataatattgatgtcttgcacaggtggacttcatatgtatgctgctttttcttcctctatcaaaaaaaatcaagcagaacaatcaact |
35979988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 35969789 - 35969989
Alignment:
| Q |
20 |
ttgataatattattgtcttgcacaggtggacttgatatgtatgcggattttccttcctataacaaagaaaatcaagcagtacaatcaactcttgaaccag |
119 |
Q |
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| T |
35969789 |
ttgataatattgatgtcttgcacaggtagacttaatatgtatgctgctttttcttcctctatcaaaaaaaatcaagcagagcaatcaactcatgaatcag |
35969888 |
T |
|
| Q |
120 |
aggttgttaaacacaagcagatcctcaactccgaaggtttg----tttcttcatcttcagccaaaagtatatattacttatcaatagcttttttgaatca |
215 |
Q |
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| T |
35969889 |
acattgttagatccaagcagaaactcaaccttgaaggtatgttaatttcttcatcttcgaccagaaacatatcttactcatcaatcacttttttgaatca |
35969988 |
T |
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| Q |
216 |
t |
216 |
Q |
| |
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| |
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| T |
35969989 |
t |
35969989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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