View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4948_low_2 (Length: 358)
Name: NF4948_low_2
Description: NF4948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4948_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 22 - 340
Target Start/End: Original strand, 2096906 - 2097224
Alignment:
| Q |
22 |
tccccactccgacatggtcaccaaccttgaaacgctggacattgggaccaacctttgccacaactccagcaatctcgtgtctgagaagaaaaaaggaaaa |
121 |
Q |
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| T |
2096906 |
tccccactccgacatggtcaccaaccttgaaacgctggacattgggaccaacctttgccacaaccccagcaatctcgtgtctgataagaaaaaaggaaaa |
2097005 |
T |
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| Q |
122 |
cacagataaataaacttatgtacataacattctcgaccttacacacatcaagaaaagctcaccacttacccgggtacaacaggatactttgaatccccat |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2097006 |
cacagataaataaacttatgtacataacattctcgaccatacacacatcaagaaaagctcaccacttacccgggtacaacaggatactttgaatccccat |
2097105 |
T |
|
| Q |
222 |
gtttattctttgcccaaattacatcagcataacaaacaccgcagtgtgtaattttaacataaacatcttcactcccgagctcccttagcaatcacacttc |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2097106 |
gtttattctttgcccaaattacatcagcataacaaacaccgcagtgtgtaattttaacataaacatcttcactcccgagctcccttagcaatcaccatta |
2097205 |
T |
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| Q |
322 |
tcatatcgtaagtatttaa |
340 |
Q |
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|||||||| ||| |||||| |
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| T |
2097206 |
tcatatcgcaaggatttaa |
2097224 |
T |
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