View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4948_low_3 (Length: 346)
Name: NF4948_low_3
Description: NF4948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4948_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 706001 - 706166
Alignment:
| Q |
1 |
cggcatcgaatcggcgagagtcgcttggtcacggattccgaactccgatgaatcaccgttcgtccttgatgatgacggcgttgggattcttaagaagaac |
100 |
Q |
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| T |
706001 |
cggcatcgaatcggcgagactcgcttggtcacggattccgaactccgatgaatcaccgttcgtccttgatgatgacggcgttgggattcttaagaagaac |
706100 |
T |
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| Q |
101 |
gatggaagcgctgttgagagtcttgactatgaagtcatagagaattttgcttatcgagaagaacag |
166 |
Q |
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| T |
706101 |
gatggaagcgctgttgagagtcttgactatgaagtcatagagaattttgcttatcgagaagaacag |
706166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 207 - 327
Target Start/End: Original strand, 706207 - 706327
Alignment:
| Q |
207 |
caagtgattacttaattaatttcgcagtaattatttttgttcaatgatcttcgagtttgttctgttatttttaggcgcatagaagaaggaagctgtatgt |
306 |
Q |
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| T |
706207 |
caagtgattacttaattaatttcgcagtaattatttttgttcaatgatcttcgagtttgttctgttatttttaggcgcatagaagaaggaagctgtatgt |
706306 |
T |
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| Q |
307 |
gagttacttgctggtggtgaa |
327 |
Q |
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| T |
706307 |
gagttacttgctggtggtgaa |
706327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 208 - 327
Target Start/End: Original strand, 24476346 - 24476465
Alignment:
| Q |
208 |
aagtgattacttaattaatttcgcagtaattatttttgttcaatgatcttcgagtttgttctgttatttttaggcgcatagaagaaggaagctgtatgtg |
307 |
Q |
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| T |
24476346 |
aagtgattagttaaataatttttctgtaattattattgttcaatgatattggattgtgatttaatatttttaggcgcatagaagaaggaagttgtatctg |
24476445 |
T |
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| Q |
308 |
agttacttgctggtggtgaa |
327 |
Q |
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| T |
24476446 |
agttagttgctagtggtgaa |
24476465 |
T |
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