View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4948_low_4 (Length: 324)
Name: NF4948_low_4
Description: NF4948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4948_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 13 - 310
Target Start/End: Original strand, 2097320 - 2097616
Alignment:
| Q |
13 |
atactaggataacaagtaaggttgccttgaaataaaatgaaaattagattttatatcaatgagtttaaatttcatagactgtcagtgtaaaaagttttat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2097320 |
atactaggataacaagtaaggttgccttgaaataaaatgaaaattagattttatatcaatgagtttaaatttcatagactgtcagtgtaaaatgttttat |
2097419 |
T |
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| Q |
113 |
actatgaacacatcacaagcaatcatgtgtgtgacttcagaagcggttatgaaaaaagtaaaatgtttataatgacctaacgattatgattgagtgacaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2097420 |
actatgaacacatcacaagcaatcatgtgtgtgacttcagaagcggttatgaaaaaagtaaaatgtttataatgacctaacgattatgattgagtgac-a |
2097518 |
T |
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| Q |
213 |
agtctaaaaaccctttacaccgaaagtatagataaattaaatcctaaaagaattactccattctacaaagtggaatgagaggtaaatgtaacatatat |
310 |
Q |
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| T |
2097519 |
agtctaaaaaccctttacaccgaaagtatatataaattaaatcctaaaagaattactccattctacaaagtggaatgagaggtaaatgtaacatatat |
2097616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 73 - 256
Target Start/End: Original strand, 10231799 - 10231980
Alignment:
| Q |
73 |
gagtttaaatttcatagactgtcagtgtaaaaagttttatactatgaacacatcacaagcaatcatgtgtgtgacttcagaagcggttatgaaaaaagta |
172 |
Q |
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| T |
10231799 |
gagtttaattttgatatattgtcagtgtaaaaagttttacactgtccacatattacaatcaatcatatgtgtgattttagaaatagttatgataaaagtc |
10231898 |
T |
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| Q |
173 |
aaatgtttataatgacctaacgattatgattgagtgacaaagtctaaaaaccctttacaccgaaagtatagataaattaaatcc |
256 |
Q |
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| T |
10231899 |
aaatgattttaatgatctgatgattgtgattgattgac--agtataaaatatctttacaccgaatgtgtagatgaattaaatcc |
10231980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 210
Target Start/End: Complemental strand, 1132289 - 1132153
Alignment:
| Q |
73 |
gagtttaaatttcatagactgtcagtgtaaaaagttttatactatgaacacatcacaagcaatcatgtgtgtgacttcagaagcggttatgaaaaaagta |
172 |
Q |
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| T |
1132289 |
gagtttaattttcatacactgtcagtgtaaaaaaatt-acattgtctacacatcacaaccagtcatgtgtgtgtctttagaattagttatgataaaagtc |
1132191 |
T |
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| Q |
173 |
aaatgtttataatgacctaacgattatgattgagtgac |
210 |
Q |
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| T |
1132190 |
aaatgtttctaatgatctgacggttatgattgattgac |
1132153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 121 - 205
Target Start/End: Complemental strand, 2101256 - 2101172
Alignment:
| Q |
121 |
cacatcacaagcaatcatgtgtgtgacttcagaagcggttatgaaaaaagtaaaatgtttataatgacctaacgattatgattga |
205 |
Q |
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| T |
2101256 |
cacatcactaccaatcatgtgtgtaacttgaaaactggttatgataaaagtcaaatgtttctaatgatctaacggttatgattga |
2101172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 111
Target Start/End: Complemental strand, 38900129 - 38900091
Alignment:
| Q |
73 |
gagtttaaatttcatagactgtcagtgtaaaaagtttta |
111 |
Q |
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| T |
38900129 |
gagtttaattttcatacactgtcagtgtaaaaagtttta |
38900091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 205
Target Start/End: Original strand, 48140440 - 48140555
Alignment:
| Q |
90 |
actgtcagtgtaaaaagttttatactatgaacacatcacaagcaatcatgtgtgtgacttcagaagcggttatgaaaaaagtaaaatgtttataatgacc |
189 |
Q |
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| T |
48140440 |
actgtcaatgtaaaatgttttacactgtcaacacattataatcaatcatgtgtatgactttagaagttgttatgataaaagtcagatgcttctaatgact |
48140539 |
T |
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| Q |
190 |
taacgattatgattga |
205 |
Q |
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| T |
48140540 |
tgacaattatgattga |
48140555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 7705402 - 7705312
Alignment:
| Q |
119 |
aacacatcacaagcaatcatgtgtgtgacttcagaagcggttatgaaaaaagtaaaatgtttataatgacctaacgattatgattgagtgaca |
211 |
Q |
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| T |
7705402 |
aacacatcacaacaaatcatg--tgtgactttaaaagtggttatgataaaagtcaaatgtttccaatgacctgactgttatgattgattgaca |
7705312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 16252680 - 16252635
Alignment:
| Q |
119 |
aacacatcacaagcaatcatgtgtgtgacttcagaagcggttatga |
164 |
Q |
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| T |
16252680 |
aacacatcacaatcaatcatgtgtgtgactttagaagtgattatga |
16252635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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