View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4948_low_6 (Length: 302)
Name: NF4948_low_6
Description: NF4948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4948_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 2563947 - 2564220
Alignment:
| Q |
18 |
gctgcttggttatacaaggccagtggagaaagcaaatacttgaagtacatcacagataaccaaggttggaatcaggcagcgtctgagttcagctgggata |
117 |
Q |
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| T |
2563947 |
gctgcttggttatacaaggccagtggagaaagcaagtacttgaagtacatcacagataaccaaggttggaatcaggcagcgtctgagttcagctgggata |
2564046 |
T |
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| Q |
118 |
acaaatttgttggagttcaaacattactaacacaggtctttatatttacagatacatataacaaactaatgatcttttactaaacat---tagttccaaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2564047 |
acaaatttgttggagttcaaacattactaacacaggtctttatatttacacatacatataacaaactaatgatcttttactaaacattagtagttccaaa |
2564146 |
T |
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| Q |
215 |
gaaagaattaactcaataattttactaggaattctatggtgggaagaaggacttagcaaagattcatagtgatg |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2564147 |
gaaagaattaactcaataattttactaggaattctatggtgggaagaaggacttagcaaagattcatagtgatg |
2564220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 22 - 165
Target Start/End: Original strand, 2573801 - 2573944
Alignment:
| Q |
22 |
cttggttatacaaggccagtggagaaagcaaatacttgaagtacatcacagataaccaaggttggaatcaggcagcgtctgagttcagctgggataacaa |
121 |
Q |
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||||| |||||||||| ||||| |||||||||||||||| |||||||||| |||||||||||||| ||| |||| |||||| || |||||||||||||| |
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| T |
2573801 |
cttggctatacaaggctagtggggaaagcaaatacttgacgtacatcacaagtaaccaaggttggagtcaagcagtgtctgaatttagctgggataacaa |
2573900 |
T |
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| Q |
122 |
atttgttggagttcaaacattactaacacaggtctttatattta |
165 |
Q |
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| T |
2573901 |
atttgttggagctcaaacattactaacacaggtattcatattta |
2573944 |
T |
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