View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4949-Insertion-1 (Length: 869)

Name: NF4949-Insertion-1
Description: NF4949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4949-Insertion-1
NF4949-Insertion-1
[»] chr7 (5 HSPs)
chr7 (98-660)||(24849460-24850023)
chr7 (726-869)||(24850089-24850232)
chr7 (7-96)||(24849331-24849420)
chr7 (418-473)||(24863232-24863287)
chr7 (9-50)||(13827449-13827490)
[»] chr6 (4 HSPs)
chr6 (218-401)||(3905682-3905863)
chr6 (9-50)||(32984246-32984287)
chr6 (11-50)||(17866078-17866117)
chr6 (105-184)||(3905881-3905956)
[»] chr2 (5 HSPs)
chr2 (7-96)||(23152380-23152468)
chr2 (7-96)||(23563637-23563725)
chr2 (9-76)||(21546271-21546338)
chr2 (9-50)||(25416790-25416831)
chr2 (9-50)||(39614271-39614312)
[»] chr8 (1 HSPs)
chr8 (7-54)||(32135545-32135592)
[»] chr3 (2 HSPs)
chr3 (7-50)||(14308509-14308552)
chr3 (9-50)||(25536079-25536120)
[»] chr4 (1 HSPs)
chr4 (9-50)||(29896759-29896800)


Alignment Details
Target: chr7 (Bit Score: 540; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 98 - 660
Target Start/End: Original strand, 24849460 - 24850023
Alignment:
Q  98 gagctggaaatttaaattttgaggcttggcaagacatcttcatcttacagctagcactgggaattgggtttcatatctcattagagggtttcacgtttgc 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24849460 gagctggaaatttaaattttgaggcttggcaagacatcttcatcttacagctagcactgggaattgggtctcatatctcattagagggtttcacgtttgc 24849559  T
Q  198 ggttaatcctcttcgcccatatcgtgtctttgtcaataagttctagtttgctaatagaagtttgcgacacttgagactgatgaggacgaggagtgattgt 297  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24849560 ggttaatcctcttcacccatatcgtgtctttgtcaataagttctagtttgctaatagaagtttgtgacacttgagactgatgaggacgaggagtgattgt 24849659  T
Q  298 tgatgctcaatgcatgatctagtaagtggtttttgaccagtcataggaaaagagacacatatgactagactacatcaacataaaattgggacaaatctag 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24849660 tgatgctcaatgcatgatctagtaagtggtttttgaccagtcataggaaaagagacacatatgactagactacatcaacataaaattgggacaaatctag 24849759  T
Q  398 aggtgagttcccaattacctgaattgattcggggatacttgattccagttatattaatctggttgatgatttgaactgcagtgtattatgtcttttgata 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24849760 aggtgagttcccaattacctgaattgattcggggatacttgattccagttatattaatctggttgatgatttgaactgcagtgtattatgtcttttgata 24849859  T
Q  498 ttagccaggaagg-ttggtcgattgagactatggagttactaatctatgatacaacttaggagagagtacacaaaagtaaagaggccaaacactaataac 596  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24849860 ttagccaggaaggttttgtcgattgagactatggagttactaatctatgatacaacttaggagagagtacacaaaagtaaagaggccaaacactaataac 24849959  T
Q  597 tgcaacatgcacaagatgtgcgaactgatacaccagataattgcaacaacaaaaggagctatct 660  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24849960 tgcaacatgcacaagatgtgcgaactgatacaccagataattgcaacaacaaaaggagctatct 24850023  T

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Target: chr7; HSP #2
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 726 - 869
Target Start/End: Original strand, 24850089 - 24850232
Alignment:
Q  726 gcaagaaccaaaggaacatgctaccttgcagatcctctnnnnnnncatgctaccttgatctgatacaacatagtaactgatctaagtaaatttatttgtc 825  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24850089 gcaagaaccaaaggaacatgctaccttgcagatcctctaaaaaaacatgctaccttgatctgatacaacatagtaactgatctaagtaaatttatttgtc 24850188  T
Q  826 aaaattcaaaaattagtagaaacacagctgattctggagtggta 869  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  24850189 aaaattcaaaaattagtagaaacacagctgattctggagtggta 24850232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 24849331 - 24849420
Alignment:
Q  7 acacacaacaacttttattatctcaattgacattttcaatatcatttgatttataaaattctcattcttggagaaactttgttcattctt 96  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24849331 acacacaacaacttttattatctcaattgacattttgaatatcatttgatttataaaattctcattcttggagaaactttgttcattctt 24849420  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 418 - 473
Target Start/End: Complemental strand, 24863287 - 24863232
Alignment:
Q  418 gaattgattcggggatacttgattccagttatattaatctggttgatgatttgaac 473  Q
    |||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||    
T  24863287 gaattgattctgggatacttgattccagttatgttaaactggttgatgatttgaac 24863232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 13827449 - 13827490
Alignment:
Q  9 acacaacaacttttattatctcaattgacattttcaatatca 50  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  13827449 acacaacaactttcattgtctcaattgacattttcaatatca 13827490  T

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Target: chr6 (Bit Score: 97; Significance: 3e-47; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 218 - 401
Target Start/End: Complemental strand, 3905863 - 3905682
Alignment:
Q  218 atcgtgtctttgtcaataagttctagtttgctaatagaagtttgcgacacttgagactgatgaggacgaggagtgattgttgatgctcaatgcatgatct 317  Q
    |||||||||| ||||||||||| || |||||||||||||||||| |||| |||||||||  |||||| |||||||||||||||||||||||||||||| |    
T  3905863 atcgtgtcttcgtcaataagttataatttgctaatagaagtttgtgacatttgagactggcgaggacaaggagtgattgttgatgctcaatgcatgattt 3905764  T
Q  318 agtaagtggtttttgaccagtcataggaaaagagacacatatgactagactacatcaacataaaattgggacaaatctagaggt 401  Q
    ||||||| |||||||||  ||||||| || || |||||  |||||||||| | || ||||||||| ||||||||||||||||||    
T  3905763 agtaagtagtttttgacatgtcatagtaagagggacac--atgactagaccatattaacataaaaatgggacaaatctagaggt 3905682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 32984246 - 32984287
Alignment:
Q  9 acacaacaacttttattatctcaattgacattttcaatatca 50  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  32984246 acacaacaacttttattgtctcaattgacattttcaatatca 32984287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 17866078 - 17866117
Alignment:
Q  11 acaacaacttttattatctcaattgacattttcaatatca 50  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  17866078 acaacaactttcattatctcaattgacattttcaatatca 17866117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 184
Target Start/End: Complemental strand, 3905956 - 3905881
Alignment:
Q  105 aaatttaaattttgaggcttggcaagacatcttcatcttacagctagcactgggaattgggtttcatatctcattagagg 184  Q
    ||||||||||||||||| |||||||||||||||| ||||||    |  ||| | |||||||||||||||||||||| |||    
T  3905956 aaatttaaattttgaggtttggcaagacatcttcctcttac----aatacttgaaattgggtttcatatctcattatagg 3905881  T

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Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 23152468 - 23152380
Alignment:
Q  7 acacacaacaacttttattatctcaattgacattttcaatatcatttgatttataaaattctcattcttggagaaactttgttcattctt 96  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||| | ||||||| |||||||||    
T  23152468 acacacaacaactttcattatctcaattgacattttcaatatcacttgattt-taaaattctcattcttgaaaaaactttattcattctt 23152380  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 23563725 - 23563637
Alignment:
Q  7 acacacaacaacttttattatctcaattgacattttcaatatcatttgatttataaaattctcattcttggagaaactttgttcattctt 96  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||| | ||||||| |||||||||    
T  23563725 acacacaacaactttcattatctcaattgacattttcaatatcacttgattt-taaaattctcattcttgaaaaaactttattcattctt 23563637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 21546338 - 21546271
Alignment:
Q  9 acacaacaacttttattatctcaattgacattttcaatatcatttgatttataaaattctcattcttg 76  Q
    ||||||||||||||||||||  |||||||||||| ||||||| ||||||  ||||| |||||||||||    
T  21546338 acacaacaacttttattatcataattgacatttttaatatcacttgattcctaaaactctcattcttg 21546271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 25416831 - 25416790
Alignment:
Q  9 acacaacaacttttattatctcaattgacattttcaatatca 50  Q
    ||||||||||||| ||||||| ||||||||||||||||||||    
T  25416831 acacaacaactttcattatctaaattgacattttcaatatca 25416790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 39614312 - 39614271
Alignment:
Q  9 acacaacaacttttattatctcaattgacattttcaatatca 50  Q
    ||||||||||||| ||| ||||||||||||||||| ||||||    
T  39614312 acacaacaactttcattgtctcaattgacattttctatatca 39614271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 32135545 - 32135592
Alignment:
Q  7 acacacaacaacttttattatctcaattgacattttcaatatcatttg 54  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||    
T  32135545 acacacaacaactttcattatctcaattgacattttcaatattatttg 32135592  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 14308552 - 14308509
Alignment:
Q  7 acacacaacaacttttattatctcaattgacattttcaatatca 50  Q
    |||||||||| |||| ||||||||||||||||||||||||||||    
T  14308552 acacacaacatctttcattatctcaattgacattttcaatatca 14308509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 25536120 - 25536079
Alignment:
Q  9 acacaacaacttttattatctcaattgacattttcaatatca 50  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  25536120 acacaacaactttcattctctcaattgacattttcaatatca 25536079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 29896759 - 29896800
Alignment:
Q  9 acacaacaacttttattatctcaattgacattttcaatatca 50  Q
    ||||||||||||| |||||||||||||| |||||||||||||    
T  29896759 acacaacaactttcattatctcaattgatattttcaatatca 29896800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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