View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4949-Insertion-2 (Length: 459)

Name: NF4949-Insertion-2
Description: NF4949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4949-Insertion-2
NF4949-Insertion-2
[»] chr3 (4 HSPs)
chr3 (8-458)||(1726397-1726838)
chr3 (121-200)||(13361622-13361701)
chr3 (121-200)||(13293506-13293585)
chr3 (392-454)||(13293218-13293280)
[»] chr7 (2 HSPs)
chr7 (124-252)||(4447384-4447512)
chr7 (26-239)||(10347322-10347535)
[»] chr6 (2 HSPs)
chr6 (108-344)||(17235652-17235888)
chr6 (157-214)||(25723558-25723615)
[»] chr4 (2 HSPs)
chr4 (121-194)||(11450232-11450305)
chr4 (152-200)||(12407100-12407148)
[»] chr8 (1 HSPs)
chr8 (108-245)||(17932256-17932393)
[»] chr2 (1 HSPs)
chr2 (152-194)||(22677941-22677983)
[»] chr1 (1 HSPs)
chr1 (152-202)||(23976337-23976387)
[»] scaffold0011 (1 HSPs)
scaffold0011 (161-214)||(67272-67325)


Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 8 - 458
Target Start/End: Complemental strand, 1726838 - 1726397
Alignment:
Q  8 aagccatcaaagtcataatggcttcttcttcattagtttcttcatcaagttcatcccatgttgacatgaaacctttcttgactctaattttgaatcttta 107  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1726838 aagccatcaaagtcatattggcttcttcttcattagtttcttcatcaagttcatcccatgttgacatgaaacctttcttgaatctaattttgaatcttta 1726739  T
Q  108 cttcttagagatttccttctttgacttgtccgtctgcaactctagacaatcagcaatgaagtgatcatgtttcttgctgttgaagcaacccttctaatca 207  Q
     |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||    
T  1726738 tttcttagagatttccttctttgacttgttcgtctgcaactctagacaatcagcaatgaagtgaccaggtttcttgctgttgaagaaacccttctaatca 1726639  T
Q  208 tccttctcatccttgtagcctgatcctttagatccactagttctagttggaaacatttttcttcttggtaaggtacttaaatattttggtcagaaatgtc 307  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||        
T  1726638 tccttctcatccttgtagtctgatcctttagatccactagttctagttggaaacatttttcttcttggtaaggtacttgaatattttggtcagaaa---- 1726543  T
Q  308 atctcttcagcatctaacccatcttcagattctccatctagagtctcttctgactcaacaacttgaagagcttagtagatatcccttagcgggttcatct 407  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  1726542 -----ttcagcatctaacccatcttcagattctccatctagagtctcttctgactcaacaacttgaagagcttagtagatttcccttagcggattcatct 1726448  T
Q  408 ccaacaagctccatctcatgacagttgagataacttattagattctcaatg 458  Q
    ||||||||||||||||||||| | ||||| |||||||||||||||||||||    
T  1726447 ccaacaagctccatctcatgatacttgaggtaacttattagattctcaatg 1726397  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 121 - 200
Target Start/End: Original strand, 13361622 - 13361701
Alignment:
Q  121 tccttctttgacttgtccgtctgcaactctagacaatcagcaatgaagtgatcatgtttcttgctgttgaagcaaccctt 200  Q
    |||||||||||||||||  |||| ||||||||||||||||||||||| ||| || ||||||||| |  ||||||||||||    
T  13361622 tccttctttgacttgtctttctgtaactctagacaatcagcaatgaaatgaccaagtttcttgcagcggaagcaaccctt 13361701  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 200
Target Start/End: Complemental strand, 13293585 - 13293506
Alignment:
Q  121 tccttctttgacttgtccgtctgcaactctagacaatcagcaatgaagtgatcatgtttcttgctgttgaagcaaccctt 200  Q
    ||||||||| |||||||  |||| ||||||||||| ||||||||||| ||| || ||||||||| |  ||||||||||||    
T  13293585 tccttctttcacttgtctttctgtaactctagacagtcagcaatgaaatgaccaagtttcttgcagcggaagcaaccctt 13293506  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 454
Target Start/End: Complemental strand, 13293280 - 13293218
Alignment:
Q  392 cttagcgggttcatctccaacaagctccatctcatgacagttgagataacttattagattctc 454  Q
    |||||| |||||||||||||||||||| ||||||||| | |||||  | ||||| ||||||||    
T  13293280 cttagcaggttcatctccaacaagctcaatctcatgatatttgagggagcttatcagattctc 13293218  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 124 - 252
Target Start/End: Original strand, 4447384 - 4447512
Alignment:
Q  124 ttctttgacttgtccgtctgcaactctagacaatcagcaatgaagtgatcatgtttcttgctgttgaagcaacccttctaatcatccttctcatccttgt 223  Q
    ||||||||||||||| |||||||||||||||| |||| ||||||||||||| ||||||||| ||||||||| ||||||| || ||| ||||   | ||||    
T  4447384 ttctttgacttgtccttctgcaactctagacagtcagtaatgaagtgatcaggtttcttgcagttgaagcatcccttctgattatctttctagcctttgt 4447483  T
Q  224 agcctgatcctttagatccactagttcta 252  Q
    | || |||||||| |||| |||| |||||    
T  4447484 atccagatccttttgatctactacttcta 4447512  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 239
Target Start/End: Complemental strand, 10347535 - 10347322
Alignment:
Q  26 tggcttcttcttcattagtttcttcatcaagttcatcccatgttgacatgaaacctttcttgactctaattttgaatctttacttcttagagatttcctt 125  Q
    ||||||||||||||| ||||| ||||| ||| || |||||||||| ||||  || ||| |||||| |  |||||||  | | |||||||||| |||| ||    
T  10347535 tggcttcttcttcatcagtttattcatgaagatcttcccatgttgccatgtgacttttattgactttgcttttgaaattctccttcttagagctttcatt 10347436  T
Q  126 ctttgacttgtccgtctgcaactctagacaatcagcaatgaagtgatcatgtttcttgctgttgaagcaacccttctaatcatccttctcatccttgtag 225  Q
    |||| |||||| | || | |||||| |||| |||| |||||||||  || |||| ||||  ||||||||||| ||    |||||||||| ||| |||||     
T  10347435 ctttaacttgttcttcagtaactctggacagtcagaaatgaagtggacaagttttttgcaattgaagcaaccttttcggtcatccttcttatctttgtat 10347336  T
Q  226 cctgatcctttaga 239  Q
    ||||||||||||||    
T  10347335 cctgatcctttaga 10347322  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 108 - 344
Target Start/End: Original strand, 17235652 - 17235888
Alignment:
Q  108 cttcttagagatttccttctttgacttgtccgtctgcaactctagacaatcagcaatgaagtgatcatgtttcttgctgttgaagcaacccttctaatca 207  Q
    ||||||||||||||| ||||||| || |||| |||||||||||||  | ||  | || |||||| || |||||||||  |||||| |  |||||| ||||    
T  17235652 cttcttagagatttctttctttggctcgtccttctgcaactctaggaagtcgtctataaagtgaccaggtttcttgcaattgaagtattccttctgatca 17235751  T
Q  208 tccttctcatccttgtagcctgatcctttagatccactagttctagttggaaacatttttcttctt--ggtaaggtacttaaatattttggtcagaaatg 305  Q
    || |||| || |||||| |  ||||||||  ||  || | |||||  |  ||||||||| ||||||  ||| ||||||| | || |||||||||||||||    
T  17235752 tctttcttatacttgtaactcgatcctttttatatacaacttctacctaaaaacatttt-cttcttttggtcaggtactgatatcttttggtcagaaatg 17235850  T
Q  306 tcatctcttcagcatctaacccatcttcagattctccat 344  Q
    ||||||||| |||||||||  ||||||||||||||||||    
T  17235851 tcatctctttagcatctaa-tcatcttcagattctccat 17235888  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 25723615 - 25723558
Alignment:
Q  157 tcagcaatgaagtgatcatgtttcttgctgttgaagcaacccttctaatcatccttct 214  Q
    ||||||||||| ||| || ||||||||| ||||||||| ||||||| ||| |||||||    
T  25723615 tcagcaatgaaatgaccaggtttcttgcagttgaagcaccccttctgatcttccttct 25723558  T

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Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 121 - 194
Target Start/End: Complemental strand, 11450305 - 11450232
Alignment:
Q  121 tccttctttgacttgtccgtctgcaactctagacaatcagcaatgaagtgatcatgtttcttgctgttgaagca 194  Q
    |||||||| ||||||||| |||| |||||| |||||||| ||||||| |||||| |||||||||||||||||||    
T  11450305 tccttcttcgacttgtccttctgtaactctggacaatcaacaatgaaatgatcaagtttcttgctgttgaagca 11450232  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 12407148 - 12407100
Alignment:
Q  152 gacaatcagcaatgaagtgatcatgtttcttgctgttgaagcaaccctt 200  Q
    |||||||||||||||||||| || ||||||| | ||||||||| |||||    
T  12407148 gacaatcagcaatgaagtgaccaggtttcttacagttgaagcatccctt 12407100  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 108 - 245
Target Start/End: Complemental strand, 17932393 - 17932256
Alignment:
Q  108 cttcttagagatttccttctttgacttgtccgtctgcaactctagacaatcagcaatgaagtgatcatgtttcttgctgttgaagcaacccttctaatca 207  Q
    |||||||||| |||| |||||  |||||||| | ||||| ||| |||||  || ||| | |||| || | ||||||| || |||||||||||||| ||||    
T  17932393 cttcttagagctttctttcttacacttgtccttttgcaaatctggacaacaagtaatcacgtgaccaggcttcttgcagtggaagcaacccttctgatca 17932294  T
Q  208 tccttctcatccttgtagcctgatcctttagatccact 245  Q
    ||||||| ||||||||||| ||||| ||| || |||||    
T  17932293 tccttcttatccttgtagcttgatcatttggacccact 17932256  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 194
Target Start/End: Original strand, 22677941 - 22677983
Alignment:
Q  152 gacaatcagcaatgaagtgatcatgtttcttgctgttgaagca 194  Q
    |||||||||||||||||||| || ||||||||| |||||||||    
T  22677941 gacaatcagcaatgaagtgaccaagtttcttgcagttgaagca 22677983  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 202
Target Start/End: Complemental strand, 23976387 - 23976337
Alignment:
Q  152 gacaatcagcaatgaagtgatcatgtttcttgctgttgaagcaacccttct 202  Q
    |||||||||||||||||||| ||  |||||||| ||||||||| |||||||    
T  23976387 gacaatcagcaatgaagtgaccagatttcttgcagttgaagcatcccttct 23976337  T

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Target: scaffold0011 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 67325 - 67272
Alignment:
Q  161 caatgaagtgatcatgtttcttgctgttgaagcaacccttctaatcatccttct 214  Q
    ||||||||||| |||| ||||||| ||||||||| ||||||| ||| |||||||    
T  67325 caatgaagtgaacatgcttcttgcagttgaagcatcccttctgatcttccttct 67272  T

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