View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4949_high_2 (Length: 232)
Name: NF4949_high_2
Description: NF4949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4949_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 30248749 - 30248540
Alignment:
| Q |
16 |
aatcctacccgtgcctaccaatttctgattcttcttaggcacaaactcgaccaagacctgcaagatcgcgtgcgactctacgttctagatcacggtttta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30248749 |
aatcctacccgtgcctaccaatttctgattctgcttaggcacaaactcgaccaagacctgcaagatcgcgtgcgactctacgttctagatcacggtttta |
30248650 |
T |
|
| Q |
116 |
actaccatgctctcaaagaccaacatacaaaactttgggnnnnnnngggacacaactgttagaaaattgatttacttggcacacacgtgactttaatatt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30248649 |
actaccatgctctcaaagaccaacatacaaaactctgggaaaaaaagggacacaactgttagaaaattgatttacttggcacacacgtgactttaatatt |
30248550 |
T |
|
| Q |
216 |
gccttctctg |
225 |
Q |
| |
|
|||||||||| |
|
|
| T |
30248549 |
gccttctctg |
30248540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 148
Target Start/End: Complemental strand, 30786281 - 30786149
Alignment:
| Q |
16 |
aatcctacccgtgcctaccaatttctgattcttcttaggcacaaactcgaccaagacctgcaagatcgcgtgcgactctacgttctagatcacggtttta |
115 |
Q |
| |
|
||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
30786281 |
aatcctacccgtgcctaccgatttctgattctgctaaggcacaaactcgaccaagacctacaagatcgtgtgcgactctacgtttcagatcacggttttg |
30786182 |
T |
|
| Q |
116 |
actaccatgctctcaaagaccaacatacaaaac |
148 |
Q |
| |
|
|||||| || ||||| |||| || ||||||||| |
|
|
| T |
30786181 |
actaccgtgttctcacagactaaaatacaaaac |
30786149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 28493770 - 28493715
Alignment:
| Q |
17 |
atcctacccgtgcctaccaatttctgattcttcttaggcacaaactcgaccaagac |
72 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||| ||| ||||| | |||||| |
|
|
| T |
28493770 |
atcctacccgtgcctaccaatttccgattctgcttagtcacgaactcaagcaagac |
28493715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University