View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4949_low_1 (Length: 337)
Name: NF4949_low_1
Description: NF4949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4949_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 26017986 - 26018238
Alignment:
| Q |
1 |
gcaatgttcttttcatgagatcaatttgctcaactatagtactattaaccgagtaactgatttagtttctcttttcaatcttgttcaggttagtaatcaa |
100 |
Q |
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| T |
26017986 |
gcaatgttcttttcatgagatcaatttgctcaactatagtactattaaacgagtaactgatttagtttctcttttcaatcttgttcaggttagtaatcaa |
26018085 |
T |
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| Q |
101 |
gaagctatagatcttgctggtcctttttgtgtagagagcaatagacaaggatccttccaagcttgtaagaaacttgtagatttatctgtatcgcgaggct |
200 |
Q |
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| T |
26018086 |
gaagctgtagatcttgctggtcctttatgtgtagagagcaatagacaaggatccttccaagcttgtaagaaacttgtagatttatctgtatcgcgaggct |
26018185 |
T |
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| Q |
201 |
ctatcgatgatataagtgttatgatcatcaaactacaaaactacgtttgaagt |
253 |
Q |
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| T |
26018186 |
ctatcgatgatataagtgttatgataatcaaattacaaaactacatttgaagt |
26018238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 52 - 287
Target Start/End: Original strand, 26003301 - 26003536
Alignment:
| Q |
52 |
agtaactgatttagtttctcttttcaatcttgttcaggttagtaatcaagaagctatagatcttgctggtcctttttgtgtagagagcaatagacaagga |
151 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| | || ||||| ||||| || |||||||||||||||| |
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| T |
26003301 |
agtaactgattaagtttctcttttcaatcttgttcaggttagtaatcaagaagcagtagatatagcacatccttattgtgcagggagcaatagacaagga |
26003400 |
T |
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| Q |
152 |
tccttccaagcttgtaagaaacttgtagatttatctgtatcgcgaggctctatcgatgatataagtgttatgatcatcaaactacaaaactacgtttgaa |
251 |
Q |
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| T |
26003401 |
tccttcccagcttgtaagaaacttgtagatttatctgtatcgcgaggctctatcgacgatataagtgttatgatcatcaaactacagaactacgtttgaa |
26003500 |
T |
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| Q |
252 |
gtttcattaaaacaagcacaaacaactaacacgaca |
287 |
Q |
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| T |
26003501 |
gtttcattaatacaaacacagacgactaacacgaca |
26003536 |
T |
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