View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4950-Insertion-2 (Length: 896)

Name: NF4950-Insertion-2
Description: NF4950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4950-Insertion-2
NF4950-Insertion-2
[»] chr7 (10 HSPs)
chr7 (493-658)||(41713915-41714078)
chr7 (689-810)||(41714108-41714229)
chr7 (8-126)||(41712845-41712964)
chr7 (154-325)||(35757546-35757714)
chr7 (177-294)||(21439692-21439808)
chr7 (169-267)||(33999594-33999692)
chr7 (173-280)||(12171117-12171223)
chr7 (179-323)||(23701779-23701921)
chr7 (691-749)||(14676352-14676410)
chr7 (691-749)||(45510464-45510522)
[»] chr4 (6 HSPs)
chr4 (190-294)||(9470022-9470126)
chr4 (190-299)||(13215960-13216068)
chr4 (180-271)||(22592635-22592726)
chr4 (688-749)||(28880113-28880174)
chr4 (149-207)||(52022744-52022801)
chr4 (253-292)||(33262306-33262345)
[»] chr8 (8 HSPs)
chr8 (154-291)||(12633513-12633648)
chr8 (172-327)||(11708762-11708911)
chr8 (187-289)||(34500568-34500670)
chr8 (691-749)||(3394083-3394141)
chr8 (174-238)||(31452222-31452286)
chr8 (154-238)||(42939319-42939403)
chr8 (691-734)||(13258623-13258666)
chr8 (148-185)||(13904005-13904042)
[»] chr3 (10 HSPs)
chr3 (147-277)||(46971409-46971532)
chr3 (167-237)||(32620334-32620404)
chr3 (691-749)||(1132836-1132894)
chr3 (688-749)||(31651343-31651404)
chr3 (691-747)||(3333988-3334044)
chr3 (691-749)||(30697493-30697551)
chr3 (691-749)||(32720983-32721041)
chr3 (691-733)||(53620359-53620401)
chr3 (692-749)||(2984013-2984070)
chr3 (145-238)||(46798967-46799060)
[»] chr5 (4 HSPs)
chr5 (180-280)||(32380467-32380567)
chr5 (172-280)||(35403069-35403177)
chr5 (693-745)||(15917518-15917570)
chr5 (691-734)||(31632971-31633014)
[»] chr1 (7 HSPs)
chr1 (150-276)||(29361524-29361648)
chr1 (150-283)||(6660519-6660650)
chr1 (154-238)||(34502829-34502912)
chr1 (697-747)||(40136131-40136181)
chr1 (691-749)||(50097736-50097794)
chr1 (691-749)||(52073359-52073417)
chr1 (154-238)||(26755354-26755439)
[»] chr2 (5 HSPs)
chr2 (154-279)||(11257048-11257173)
chr2 (169-238)||(31807767-31807836)
chr2 (691-734)||(33206924-33206967)
chr2 (691-749)||(36030915-36030973)
chr2 (696-737)||(13110470-13110511)
[»] chr6 (4 HSPs)
chr6 (197-280)||(32525027-32525110)
chr6 (171-251)||(33755631-33755711)
chr6 (688-749)||(8439294-8439354)
chr6 (688-745)||(16329505-16329562)
[»] scaffold1763 (1 HSPs)
scaffold1763 (691-749)||(505-563)


Alignment Details
Target: chr7 (Bit Score: 100; Significance: 5e-49; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 493 - 658
Target Start/End: Original strand, 41713915 - 41714078
Alignment:
Q  493 aagtgatgttatttacttttgtgttttagcccgtgaaacatatttgaggcaaagggaaactctttgcaaatgnnnnnnnnnnngcataactggacccctg 592  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||           ||||||||||| |||||    
T  41713915 aagtgatgttatttacttttgtgtttcggcccgtgaaacatatttgaggcaaagggaaactctttgcaaatg-ttttttttttgcataactgga-ccctg 41714012  T
Q  593 tattgcatgtcttatctgttaacatatgttactacagggaatgggaaaggaagactttatgagatg 658  Q
    ||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||    
T  41714013 tattgcatgtcttatttgttaacatatgttaatatagggaatgggaaaggaagactttatgagatg 41714078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 689 - 810
Target Start/End: Original strand, 41714108 - 41714229
Alignment:
Q  689 ttacattttttgaaagagtatttttgcagagaatgttaaattaatgttaatggttaatatannnnnnnattttaagaatattaggcaaaattacattggt 788  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  41714108 ttacattttttaaaagagtatttttgtagagaatgttaaattaatgttaatggttaatatatttttttattttaagaatattaggcaaaattacattggt 41714207  T
Q  789 tgtcctttaacataacttcata 810  Q
    ||||||||||||||||||||||    
T  41714208 tgtcctttaacataacttcata 41714229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 41712845 - 41712964
Alignment:
Q  8 agtttaaaacttctttagttttttattaactttaagcagtgtgttcaaaattattagtagcaggagttgataagactacgtttttgttttataattctg- 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||  ||     
T  41712845 agtttaaaacttctttagttttttattaactttaagcagtgtgttcaaaattattagcagcaggagttgataagactacgtttttgttttgtaatattgt 41712944  T
Q  107 ttcacgcaatttggtgtaaa 126  Q
    |||| |||||||||||||||    
T  41712945 ttcatgcaatttggtgtaaa 41712964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 154 - 325
Target Start/End: Complemental strand, 35757714 - 35757546
Alignment:
Q  154 tgttaaccggtgtcccggggcactggttaagggagttaaaagtggaaattttaagtcaaaaaggataatttttaagcttttaatgtaatgacagcaaacc 253  Q
    |||||||||||| ||   || ||||||||||||||||||||||| ||||||||  ||||||| |||| ||||||| |||||||||  ||||||||| | |    
T  35757714 tgttaaccggtgcccaaaggtactggttaagggagttaaaagtgaaaattttatatcaaaaatgatactttttaaacttttaatgctatgacagcacaac 35757615  T
Q  254 tttcaatacaaaataatactatatttgtcttcttaaccagtacctctcgggagacactggttaacatttccc 325  Q
    |||||||||||||||||| ||||||| |||| ||||| |||    ||| ||||||||| |||||||||||||    
T  35757614 tttcaatacaaaataatattatatttatctttttaactagt---gctccggagacactagttaacatttccc 35757546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 177 - 294
Target Start/End: Original strand, 21439692 - 21439808
Alignment:
Q  177 tggttaagggagttaaaagtggaaattttaagtcaaaaaggataatttttaagcttttaatgtaatgacagcaaacctttcaatacaaaataatactata 276  Q
    ||||||||| || ||||||||||||||||||||||||||| | | ||||||| ||||||||| |||||||||| | |||||||||||||||| |||||||    
T  21439692 tggttaaggaagctaaaagtggaaattttaagtcaaaaagaacactttttaaacttttaatgcaatgacagcacaactttcaatacaaaatactactata 21439791  T
Q  277 tttgtcttcttaaccagt 294  Q
    |||| | |||||||||||    
T  21439792 tttgac-tcttaaccagt 21439808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 169 - 267
Target Start/End: Original strand, 33999594 - 33999692
Alignment:
Q  169 cggggcactggttaagggagttaaaagtggaaattttaagtcaaaaaggataatttttaagcttttaatgtaatgacagcaaacctttcaatacaaaat 267  Q
    |||| |||||||||||| |  ||||||| |||||||||||||| |||| | | ||||||||||||||| | |||||||||| | |||||||||||||||    
T  33999594 cgggacactggttaaggaaactaaaagtagaaattttaagtcacaaagaacattttttaagcttttaacgcaatgacagcacaactttcaatacaaaat 33999692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 173 - 280
Target Start/End: Complemental strand, 12171223 - 12171117
Alignment:
Q  173 gcactggttaagggagttaaaagtggaaattttaagtcaaaaaggataatttttaagcttttaatgtaatgacagcaaacctttcaatacaaaataatac 272  Q
    |||| |||||||| || ||||| ||||||||||||||||||||| | | ||||||| ||||| ||||||||||| || | |||| |||| |||| | |||    
T  12171223 gcaccggttaaggaagctaaaaatggaaattttaagtcaaaaagaacactttttaaactttt-atgtaatgacaacacaacttttaatataaaacactac 12171125  T
Q  273 tatatttg 280  Q
    ||||||||    
T  12171124 tatatttg 12171117  T

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Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 179 - 323
Target Start/End: Complemental strand, 23701921 - 23701779
Alignment:
Q  179 gttaagggagttaaaagtggaaattttaagtcaaaaaggataatttttaagcttttaatgtaatgacagcaaacctttcaatacaaaataatactatatt 278  Q
    ||||||| || |||||| |||||||| |||| ||||| || | |||||||| |||||||| | ||||  || | ||||||||  |||||| |||||||||    
T  23701921 gttaaggaagctaaaagaggaaatttgaagtaaaaaatgacactttttaagtttttaatgcattgactacatagctttcaatgtaaaatattactatatt 23701822  T
Q  279 tgtcttcttaaccagtacctctcgggagacactggttaacatttc 323  Q
    ||  ||||||||||||  | |||||  ||||||| ||||||||||    
T  23701821 tgatttcttaaccagtgtccctcgg--gacactgattaacatttc 23701779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 691 - 749
Target Start/End: Complemental strand, 14676410 - 14676352
Alignment:
Q  691 acattttttgaaagagtatttttgcagagaatgttaaattaatgttaatggttaatata 749  Q
    |||||||||||||||||| ||||  || ||||| |||||||||| | ||||||||||||    
T  14676410 acattttttgaaagagtaattttttagggaatgataaattaatgcttatggttaatata 14676352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 691 - 749
Target Start/End: Complemental strand, 45510522 - 45510464
Alignment:
Q  691 acattttttgaaagagtatttttgcagagaatgttaaattaatgttaatggttaatata 749  Q
    ||||||| |||||||||| ||||  |||||||| |||||||||||| ||| ||||||||    
T  45510522 acattttgtgaaagagtaattttttagagaatgataaattaatgtttatgattaatata 45510464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 3e-35; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 190 - 294
Target Start/End: Complemental strand, 9470126 - 9470022
Alignment:
Q  190 taaaagtggaaattttaagtcaaaaaggataatttttaagcttttaatgtaatgacagcaaacctttcaatacaaaataatactatatttgtcttcttaa 289  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||| ||||| |||| | ||||||||||||||||||| |||||||||||||||||    
T  9470126 taaaagtggaaattttaagtcaaaaatgatagtttttaagcttttaatgcaatgagagcacaactttcaatacaaaataatattatatttgtcttcttaa 9470027  T
Q  290 ccagt 294  Q
    |||||    
T  9470026 ccagt 9470022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 190 - 299
Target Start/End: Original strand, 13215960 - 13216068
Alignment:
Q  190 taaaagtggaaattttaagtcaaaaaggataatttttaagcttttaatgtaatgacagcaaacctttcaatacaaaataatactatatttgtcttcttaa 289  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||  |||||||||| | |||||||||||||||| ||||||||||| | ||||||    
T  13215960 taaaagtggaaattttaagtcaaaaagaatactttttaagcttttaatacaatgacagcacaactttcaatacaaaatactactatatttgac-tcttaa 13216058  T
Q  290 ccagtacctc 299  Q
    ||||| ||||    
T  13216059 ccagtgcctc 13216068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 22592635 - 22592726
Alignment:
Q  180 ttaagggagttaaaagtggaaattttaagtcaaaaaggataatttttaagcttttaatgtaatgacagcaaacctttcaatacaaaataata 271  Q
    ||||||||| |||| ||| ||||||||| || ||||| ||| ||||||||||||||||| ||||||| || | ||||| |||||||||||||    
T  22592635 ttaagggagctaaaggtgaaaattttaaatccaaaagaatagtttttaagcttttaatgcaatgacaacacaactttcgatacaaaataata 22592726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 688 - 749
Target Start/End: Complemental strand, 28880174 - 28880113
Alignment:
Q  688 tttacattttttgaaagagtatttttgcagagaatgttaaattaatgttaatggttaatata 749  Q
    ||||||||||||||||||||||||||  ||||| || |||||||||||| ||| ||||||||    
T  28880174 tttacattttttgaaagagtatttttttagagagtgataaattaatgtttatgattaatata 28880113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 52022801 - 52022744
Alignment:
Q  149 ggttgtgttaaccggtgtcccggggcactggttaagggagttaaaagtggaaattttaa 207  Q
    ||||||||||||||||| ||| |||||||||||||||||| |||||||  |||||||||    
T  52022801 ggttgtgttaaccggtg-cccagggcactggttaagggagctaaaagtaaaaattttaa 52022744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 253 - 292
Target Start/End: Complemental strand, 33262345 - 33262306
Alignment:
Q  253 ctttcaatacaaaataatactatatttgtcttcttaacca 292  Q
    ||||||||||||||||||| ||||||||||| ||||||||    
T  33262345 ctttcaatacaaaataatattatatttgtctccttaacca 33262306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 4e-31; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 154 - 291
Target Start/End: Original strand, 12633513 - 12633648
Alignment:
Q  154 tgttaaccggtgtcccggggcactggttaagggagttaaaagtggaaattttaagtcaaaaaggataatttttaagcttttaatgtaatgacagcaaacc 253  Q
    |||||||||||| |||||| ||||| |||||| || |||||||||||||||||||| |||| ||| | ||||||| |||||||||  ||||||||| | |    
T  12633513 tgttaaccggtgccccgggacactg-ttaagg-aggtaaaagtggaaattttaagttaaaagggacactttttaaacttttaatgctatgacagcacaac 12633610  T
Q  254 tttcaatacaaaataatactatatttgtcttcttaacc 291  Q
    |||||||||||||||||||||||||||||| |||||||    
T  12633611 tttcaatacaaaataatactatatttgtctccttaacc 12633648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 172 - 327
Target Start/End: Complemental strand, 11708911 - 11708762
Alignment:
Q  172 ggcactggttaagggagttaaaagtggaaattttaagtcaaaaaggataatttttaagcttttaatgtaatgacagcaaacctttcaatacaaaataata 271  Q
    |||||||||||||| || ||||||||||||||||||||||||||  | | ||||||||| ||||||| ||||||| || | ||||||||||||| || ||    
T  11708911 ggcactggttaaggaagctaaaagtggaaattttaagtcaaaaa--acactttttaagcctttaatgcaatgacaacacaactttcaatacaaagtacta 11708814  T
Q  272 ctatatttgtcttcttaaccagtacctctcgggagacactggttaacatttccctt 327  Q
    ||||||||| | ||||||||||| ||||   || | || |||||||||||||||||    
T  11708813 ctatatttgac-tcttaaccagtgcctc---gggggcattggttaacatttccctt 11708762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 187 - 289
Target Start/End: Original strand, 34500568 - 34500670
Alignment:
Q  187 agttaaaagtggaaattttaagtcaaaaaggataatttttaagcttttaatgtaatgacagcaaacctttcaatacaaaataatactatatttgtcttct 286  Q
    ||||||||||||||||||||| ||||||| |||| ||||||| |||||||||  ||||||||| | |||| |||||||||||||| ||||||||||| ||    
T  34500568 agttaaaagtggaaattttaaatcaaaaatgatactttttaaacttttaatgctatgacagcacaacttttaatacaaaataatattatatttgtctcct 34500667  T
Q  287 taa 289  Q
    |||    
T  34500668 taa 34500670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 691 - 749
Target Start/End: Complemental strand, 3394141 - 3394083
Alignment:
Q  691 acattttttgaaagagtatttttgcagagaatgttaaattaatgttaatggttaatata 749  Q
    |||||||||||||||||| ||||  |||||||| |||||||||||| ||| ||||||||    
T  3394141 acattttttgaaagagtaatttttaagagaatgataaattaatgtttatgattaatata 3394083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 31452222 - 31452286
Alignment:
Q  174 cactggttaagggagttaaaagtggaaattttaagtcaaaaaggataatttttaagcttttaatg 238  Q
    |||||||||||| ||| |||||  |||||||||| ||||||| || | |||||||||||||||||    
T  31452222 cactggttaaggaagtcaaaagaagaaattttaactcaaaaatgacattttttaagcttttaatg 31452286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 238
Target Start/End: Complemental strand, 42939403 - 42939319
Alignment:
Q  154 tgttaaccggtgtcccggggcactggttaagggagttaaaagtggaaattttaagtcaaaaaggataatttttaagcttttaatg 238  Q
    ||||||||||| |||| | | ||||||||||  || |||||| ||||||||||| | ||||| |||| ||||||| |||||||||    
T  42939403 tgttaaccggtatccccgtgtactggttaagaaagctaaaagaggaaattttaatttaaaaatgatactttttaaacttttaatg 42939319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 691 - 734
Target Start/End: Complemental strand, 13258666 - 13258623
Alignment:
Q  691 acattttttgaaagagtatttttgcagagaatgttaaattaatg 734  Q
    |||||||||||||||||||||||  |||||||| ||||||||||    
T  13258666 acattttttgaaagagtatttttttagagaatgataaattaatg 13258623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 13904005 - 13904042
Alignment:
Q  148 gggttgtgttaaccggtgtcccggggcactggttaagg 185  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  13904005 gggttttgttaaccggtgccccggggcactggttaagg 13904042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 2e-24; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 147 - 277
Target Start/End: Original strand, 46971409 - 46971532
Alignment:
Q  147 tgggttgtgttaaccggtgtcccggg-gcactggttaagggagttaaaagtggaaattttaagtcaaaaaggataatttttaagcttttaatgtaatgac 245  Q
    ||||||||||||| ||||||||| || ||||||||||||||||||||||||| |||||||||||||| || |||        || |||||||| ||||||    
T  46971409 tgggttgtgttaatcggtgtccccggagcactggttaagggagttaaaagtgaaaattttaagtcaataatgat--------agtttttaatgaaatgac 46971500  T
Q  246 agcaaacctttcaatacaaaataatactatat 277  Q
    |||||| ||||||||||||||||||| |||||    
T  46971501 agcaaaactttcaatacaaaataatattatat 46971532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 167 - 237
Target Start/End: Complemental strand, 32620404 - 32620334
Alignment:
Q  167 cccggggcactggttaagggagttaaaagtggaaattttaagtcaaaaaggataatttttaagcttttaat 237  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  32620404 cccggagcactggttaaggaagttaaaagtggaaattttaagttaaaaagaataatttttaagcttttaat 32620334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 691 - 749
Target Start/End: Original strand, 1132836 - 1132894
Alignment:
Q  691 acattttttgaaagagtatttttgcagagaatgttaaattaatgttaatggttaatata 749  Q
    |||||||||||||||||| ||||  |||||||| |||||||||||| ||||||||||||    
T  1132836 acattttttgaaagagtaattttttagagaatgataaattaatgttcatggttaatata 1132894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 688 - 749
Target Start/End: Original strand, 31651343 - 31651404
Alignment:
Q  688 tttacattttttgaaagagtatttttgcagagaatgttaaattaatgttaatggttaatata 749  Q
    |||| |||||||||||||||| ||||  ||||||||||||||||||| | ||| ||||||||    
T  31651343 tttagattttttgaaagagtaattttttagagaatgttaaattaatgcttatgattaatata 31651404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 691 - 747
Target Start/End: Complemental strand, 3334044 - 3333988
Alignment:
Q  691 acattttttgaaagagtatttttgcagagaatgttaaattaatgttaatggttaata 747  Q
    |||||||||| ||||||||||||  |||||||| |||||||||||| ||| ||||||    
T  3334044 acattttttggaagagtatttttttagagaatgataaattaatgtttatgattaata 3333988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 691 - 749
Target Start/End: Complemental strand, 30697551 - 30697493
Alignment:
Q  691 acattttttgaaagagtatttttgcagagaatgttaaattaatgttaatggttaatata 749  Q
    ||||||||||||||| |||||||  |||||||| |||| ||||||| ||| ||||||||    
T  30697551 acattttttgaaagattatttttttagagaatgataaactaatgtttatgattaatata 30697493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 691 - 749
Target Start/End: Original strand, 32720983 - 32721041
Alignment:
Q  691 acattttttgaaagagtatttttgcagagaatgttaaattaatgttaatggttaatata 749  Q
    |||||| ||||||||||||||||| ||||| || |||||||||| | ||| ||||||||    
T  32720983 acatttattgaaagagtatttttgtagagagtgataaattaatgcttatgattaatata 32721041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 691 - 733
Target Start/End: Complemental strand, 53620401 - 53620359
Alignment:
Q  691 acattttttgaaagagtatttttgcagagaatgttaaattaat 733  Q
    |||||||||||||||||||||||  |||||||| |||||||||    
T  53620401 acattttttgaaagagtatttttttagagaatgataaattaat 53620359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 692 - 749
Target Start/End: Complemental strand, 2984070 - 2984013
Alignment:
Q  692 cattttttgaaagagtatttttgcagagaatgttaaattaatgttaatggttaatata 749  Q
    ||||||||||||||||| ||||  |||||||| || ||||||| ||||| ||||||||    
T  2984070 cattttttgaaagagtaattttttagagaatgatacattaatgctaatgattaatata 2984013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 238
Target Start/End: Original strand, 46798967 - 46799060
Alignment:
Q  145 tatgggttgtgttaaccggtgtcccggggcactggttaagggagttaaaagtggaaattttaagtcaaaaaggataatttttaagcttttaatg 238  Q
    |||||||  |||||||| ||||||| ||||||||||||||| ||  |||||  |||||| | | | ||||| || | |||||||||||||||||    
T  46798967 tatgggtcatgttaaccagtgtccctgggcactggttaaggaagccaaaagaagaaattgttaataaaaaaagacactttttaagcttttaatg 46799060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 180 - 280
Target Start/End: Complemental strand, 32380567 - 32380467
Alignment:
Q  180 ttaagggagttaaaagtggaaattttaagtcaaaaaggataatttttaagcttttaatgtaatgacagcaaacctttcaatacaaaataatactatattt 279  Q
    |||||| || ||||||||||||||||||||||||||| | | ||||| ||||||||||||||||||| || |  ||||||||||||||| ||||||||||    
T  32380567 ttaaggaagctaaaagtggaaattttaagtcaaaaagaacacttttttagcttttaatgtaatgacaacataattttcaatacaaaatactactatattt 32380468  T
Q  280 g 280  Q
    |    
T  32380467 g 32380467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 172 - 280
Target Start/End: Complemental strand, 35403177 - 35403069
Alignment:
Q  172 ggcactggttaagggagttaaaagtggaaattttaagtcaaaaaggataatttttaagcttttaatgtaatgacagcaaacctttcaatacaaaataata 271  Q
    |||||||||||||  || |||||||| ||| |||||||||||||| | | ||||||| ||||||||||||||||| || | |||||||||||||||| ||    
T  35403177 ggcactggttaagcaagctaaaagtgaaaactttaagtcaaaaagaacactttttaaacttttaatgtaatgacaacacaactttcaatacaaaatacta 35403078  T
Q  272 ctatatttg 280  Q
    |||||||||    
T  35403077 ctatatttg 35403069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 693 - 745
Target Start/End: Complemental strand, 15917570 - 15917518
Alignment:
Q  693 attttttgaaagagtatttttgcagagaatgttaaattaatgttaatggttaa 745  Q
    |||||||||||||||||||||| ||||| || |||||||||||| ||||||||    
T  15917570 attttttgaaagagtatttttgtagagagtgataaattaatgtttatggttaa 15917518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 691 - 734
Target Start/End: Complemental strand, 31633014 - 31632971
Alignment:
Q  691 acattttttgaaagagtatttttgcagagaatgttaaattaatg 734  Q
    |||||||||||||||||||||||| |||||||| ||||| ||||    
T  31633014 acattttttgaaagagtatttttgtagagaatgataaatgaatg 31632971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 1e-22; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 150 - 276
Target Start/End: Complemental strand, 29361648 - 29361524
Alignment:
Q  150 gttgtgttaaccggtgtcccggggcactggttaagggagttaaaagtggaaattttaagtcaaaaaggataatttttaagcttttaatgtaatgacagca 249  Q
    |||||||||||||||  ||  ||| |||| |||| ||||| |||||| |||||||||| ||||||| |||| ||||||||||||||||| ||| ||||||    
T  29361648 gttgtgttaaccggtaccc--gggtactgattaaaggagtcaaaagtagaaattttaaatcaaaaatgatagtttttaagcttttaatgcaataacagca 29361551  T
Q  250 aacctttcaatacaaaataatactata 276  Q
     | ||||||||||||||||||| ||||    
T  29361550 caactttcaatacaaaataatattata 29361524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 150 - 283
Target Start/End: Original strand, 6660519 - 6660650
Alignment:
Q  150 gttgtgttaaccggtgtcccggggcactggttaagggagttaaaagtggaaattttaagtcaaaaaggataatttttaagcttttaatgtaatgacagca 249  Q
    ||||||||||||| |||| |||  ||||| |||||| ||||||||||| ||||||||||| |||||  ||||||| |||| |||||||| ||||||| ||    
T  6660519 gttgtgttaaccgatgtctcgga-cactgattaagg-agttaaaagtgaaaattttaagttaaaaataataatttgtaagtttttaatgcaatgacaaca 6660616  T
Q  250 aacctttcaatacaaaataatactatatttgtct 283  Q
     |  ||| || |||||||||||||||||||||||    
T  6660617 caaattttaaaacaaaataatactatatttgtct 6660650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 238
Target Start/End: Original strand, 34502829 - 34502912
Alignment:
Q  154 tgttaaccggtgtcccggggcactggttaagggagttaaaagtggaaattttaagtcaaaaaggataatttttaagcttttaatg 238  Q
    |||||||| ||| |||||||||| |||||||| ||  ||||| | ||||||||| | ||||| |||| |||||||||||||||||    
T  34502829 tgttaaccagtg-cccggggcaccggttaaggaagggaaaagagaaaattttaacttaaaaaagatattttttaagcttttaatg 34502912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 697 - 747
Target Start/End: Original strand, 40136131 - 40136181
Alignment:
Q  697 tttgaaagagtatttttgcagagaatgttaaattaatgttaatggttaata 747  Q
    ||||| |||||||||||| |||||||| |||||||||||| ||| ||||||    
T  40136131 tttgagagagtatttttgtagagaatgataaattaatgtttatgattaata 40136181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 691 - 749
Target Start/End: Complemental strand, 50097794 - 50097736
Alignment:
Q  691 acattttttgaaagagtatttttgcagagaatgttaaattaatgttaatggttaatata 749  Q
    |||||||||||||||||||||||  ||||| || ||||||| |||| ||| ||||||||    
T  50097794 acattttttgaaagagtatttttttagagagtgataaattattgtttatgattaatata 50097736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 691 - 749
Target Start/End: Original strand, 52073359 - 52073417
Alignment:
Q  691 acattttttgaaagagtatttttgcagagaatgttaaattaatgttaatggttaatata 749  Q
    |||||||||||||||||| ||||  |||||||| |||||||| ||| ||| ||||||||    
T  52073359 acattttttgaaagagtaattttttagagaatgataaattaacgtttatgattaatata 52073417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 238
Target Start/End: Complemental strand, 26755439 - 26755354
Alignment:
Q  154 tgttaaccggtgtcccggggcactggttaagggagttaaaagtggaaattttaagtcaaaaaggata-atttttaagcttttaatg 238  Q
    |||||| ||||  ||| |||||| |||||||| || ||||| |||||||||||||| |||||| | |  |||||||||||||||||    
T  26755439 tgttaatcggtacccctgggcacgggttaaggaagctaaaaatggaaattttaagtaaaaaagaacacttttttaagcttttaatg 26755354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 2e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 154 - 279
Target Start/End: Complemental strand, 11257173 - 11257048
Alignment:
Q  154 tgttaaccggtgtcccggggcactggttaagggagttaaaagtggaaattttaagtcaaaaaggataatttttaagcttttaatgtaatgacagcaaacc 253  Q
    |||||||| ||| || |||||| ||||||||| || |||||||| ||||||||||||||||   | | ||||||||||||||||| ||||||| || | |    
T  11257173 tgttaacccgtgcccaggggcattggttaaggaagctaaaagtgaaaattttaagtcaaaagtaacactttttaagcttttaatgcaatgacatcataac 11257074  T
Q  254 tttcaatacaaaataatactatattt 279  Q
    ||||||||||||||| || |||||||    
T  11257073 tttcaatacaaaatactattatattt 11257048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 31807767 - 31807836
Alignment:
Q  169 cggggcactggttaagggagttaaaagtggaaattttaagtcaaaaaggataatttttaagcttttaatg 238  Q
    ||||||||||||||||| ||  |||||  |||||| ||||||||||| || | |||||||||||||||||    
T  31807767 cggggcactggttaaggaagccaaaagaagaaattgtaagtcaaaaaagacactttttaagcttttaatg 31807836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 691 - 734
Target Start/End: Complemental strand, 33206967 - 33206924
Alignment:
Q  691 acattttttgaaagagtatttttgcagagaatgttaaattaatg 734  Q
    ||||||||||||||||| |||||  |||||||||||||||||||    
T  33206967 acattttttgaaagagtgtttttttagagaatgttaaattaatg 33206924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 691 - 749
Target Start/End: Complemental strand, 36030973 - 36030915
Alignment:
Q  691 acattttttgaaagagtatttttgcagagaatgttaaattaatgttaatggttaatata 749  Q
    |||||||| ||||||||||||||  |||||||| |||||||||| | ||| ||||||||    
T  36030973 acatttttggaaagagtatttttttagagaatgataaattaatgcttatgattaatata 36030915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 696 - 737
Target Start/End: Complemental strand, 13110511 - 13110470
Alignment:
Q  696 ttttgaaagagtatttttgcagagaatgttaaattaatgtta 737  Q
    |||||| ||||||||||||||||||||| ||||| |||||||    
T  13110511 ttttgatagagtatttttgcagagaatgataaataaatgtta 13110470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 6e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 197 - 280
Target Start/End: Complemental strand, 32525110 - 32525027
Alignment:
Q  197 ggaaattttaagtcaaaaaggataatttttaagcttttaatgtaatgacagcaaacctttcaatacaaaataatactatatttg 280  Q
    ||||||||||||| |||||| | |||||||||  |||||||| |||||||||| | |||||||||||||||| |||||||||||    
T  32525110 ggaaattttaagttaaaaagaacaatttttaaatttttaatgcaatgacagcacaactttcaatacaaaatactactatatttg 32525027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 33755631 - 33755711
Alignment:
Q  171 gggcactggttaagggagttaaaagtggaaattttaagtcaaaaaggataatttttaagcttttaatgtaatgacagcaaa 251  Q
    ||||||||||||||| ||  ||||| ||||||||||| ||||||| || | ||||||||||||||||| | ||||| ||||    
T  33755631 gggcactggttaaggaagccaaaagaggaaattttaactcaaaaatgacactttttaagcttttaatgcattgacaacaaa 33755711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 688 - 749
Target Start/End: Original strand, 8439294 - 8439354
Alignment:
Q  688 tttacattttttgaaagagtatttttgcagagaatgttaaattaatgttaatggttaatata 749  Q
    |||| ||||||||||| |||||||||  |||||||| |||||||||||| ||| ||||||||    
T  8439294 tttatattttttgaaaaagtatttttt-agagaatgataaattaatgtttatgattaatata 8439354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 688 - 745
Target Start/End: Complemental strand, 16329562 - 16329505
Alignment:
Q  688 tttacattttttgaaagagtatttttgcagagaatgttaaattaatgttaatggttaa 745  Q
    |||||||||||||||||| || ||||  |||||||| |||||||||| ||||| ||||    
T  16329562 tttacattttttgaaagaataattttttagagaatgataaattaatgctaatgattaa 16329505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1763 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 691 - 749
Target Start/End: Original strand, 505 - 563
Alignment:
Q  691 acattttttgaaagagtatttttgcagagaatgttaaattaatgttaatggttaatata 749  Q
    ||||||||||||||||||  |||  ||||||||||||||||||||| ||| ||||||||    
T  505 acattttttgaaagagtaaatttttagagaatgttaaattaatgtttatgattaatata 563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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