View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4950_high_11 (Length: 236)
Name: NF4950_high_11
Description: NF4950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4950_high_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 28741851 - 28742072
Alignment:
| Q |
1 |
ccctaacaacccagctgaaacattcaaagaaggaataatcccagttgtgagattcagtttcatcacaatgaatgtgaacattaccgacaacatgagactc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28741851 |
ccctaacaacccagctgaaacattcaaagaaggaataatcccagttgtgagattcagtttcatcacaatgaacgtgaacattaccgacaacatgagactc |
28741950 |
T |
|
| Q |
101 |
acgaataatgccctaacagtaacctgcttctgccaggtaggaacaagttttccttcaaaccctttttcaatagaaaactcctccggttgatcatcgttcg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28741951 |
acgaataatgccctaacagtaacctgcttctgccacgtaggaacaagttttccttcaaaccctttttcaatagaaaactcctccggttgatcatcgttcg |
28742050 |
T |
|
| Q |
201 |
acaccggtgtaactgcaccact |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
28742051 |
acaccggtgtaactgcaccact |
28742072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 28750696 - 28750911
Alignment:
| Q |
1 |
ccctaacaacccagctgaaacattcaaagaaggaataatcccagttgtgagattcagtttcatcacaatgaatgtgaacattaccgacaacatgagactc |
100 |
Q |
| |
|
||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| |||||||| || || |||||||| |||||||||||||||||| |
|
|
| T |
28750696 |
ccctaacaatccagcagaaacattcaacgaaggaataatcccagttgtgagattcaacttcatcacgataaacgtgaacatcaccgacaacatgagactc |
28750795 |
T |
|
| Q |
101 |
acgaataatgccctaacagtaacctgcttctgccaggtaggaacaagttttccttcaaaccctttttcaatagaaaactcctccggttgatcatcgttcg |
200 |
Q |
| |
|
| |||| |||||||||||| ||||| |||||||| ||||||||| | ||||||||||||||||||| | ||||| |||||| |||| ||||| ||| |
|
|
| T |
28750796 |
gcaaatattgccctaacagtgacctgtttctgccacgtaggaacagatgttccttcaaaccctttttccacagaaatctcctcgagttgttcatctttca |
28750895 |
T |
|
| Q |
201 |
acaccggtgtaactgc |
216 |
Q |
| |
|
||||||| | |||||| |
|
|
| T |
28750896 |
acaccggcgcaactgc |
28750911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 39941082 - 39940907
Alignment:
| Q |
1 |
ccctaacaacccagctgaaacattcaaagaaggaataatcccagttgtgagattcagtttcatcacaatgaatgtgaacattaccgacaacatgagactc |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| |||||||| || || | ||||| |||| |
|
|
| T |
39941082 |
ccctaacaacccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgatagcatgatactc |
39940983 |
T |
|
| Q |
101 |
acgaataatgccctaacagtaacctgcttctgccaggtaggaacaagttttccttcaaaccctttttcaatagaaa |
176 |
Q |
| |
|
|||| || |||||||||||||||||| |||||||| | ||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
39940982 |
acgactattgccctaacagtaacctgtttctgccacgaaggaacagattttccttcaaaccctttttcaatggaaa |
39940907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 33 - 176
Target Start/End: Complemental strand, 39956731 - 39956588
Alignment:
| Q |
33 |
gaataatcccagttgtgagattcagtttcatcacaatgaatgtgaacattaccgacaacatgagactcacgaataatgccctaacagtaacctgcttctg |
132 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||| |||||||| || || | ||||| |||||||| || ||||||| | |||||||| ||||| |
|
|
| T |
39956731 |
gaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgatagcatgatactcacgactattgccctagccgtaacctgtttctg |
39956632 |
T |
|
| Q |
133 |
ccaggtaggaacaagttttccttcaaaccctttttcaatagaaa |
176 |
Q |
| |
|
||| | ||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
39956631 |
ccacgaaggaacagattttccttcaaaccctttttcaatggaaa |
39956588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 206
Target Start/End: Original strand, 7961143 - 7961337
Alignment:
| Q |
12 |
cagctgaaacattcaaagaaggaataatcccagttgtgagattcagtttcatcacaatgaatgtgaacattaccgacaacatgagactcacgaataatgc |
111 |
Q |
| |
|
|||| |||||||| || ||||||||||| |||||||||||||| || |||||||| ||||||||||||||||||| ||| | |||||||||||||| || |
|
|
| T |
7961143 |
cagcagaaacatttaatgaaggaataattccagttgtgagattgagcttcatcacgatgaatgtgaacattaccgtcaaaacgagactcacgaatatagc |
7961242 |
T |
|
| Q |
112 |
cctaacagtaacctgcttctgccaggtaggaacaagttttccttcaaaccctttttcaatagaaaactcctccggttgatcatcgttcgacaccg |
206 |
Q |
| |
|
| |||| || || | | ||||| ||||||| |||||||||||||||||||| |||||||| ||||||| | || |||||||||||||||| |
|
|
| T |
7961243 |
cataaccgtgacattttggtgccacataggaactgattttccttcaaacccttttttaatagaaacctcctcctgctgttcatcgttcgacaccg |
7961337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 207
Target Start/End: Original strand, 7963656 - 7963863
Alignment:
| Q |
2 |
cctaacaacccagctgaaacattcaaagaaggaataatcccagttgtgagattcagtttcatcacaatgaatgtgaacattaccga-caacatgagactc |
100 |
Q |
| |
|
|||||||||||||| |||||||||| ||| ||||||||||||||||||||||||| ||||||| |||||||||||||| | ||| ||||||||||||| |
|
|
| T |
7963656 |
cctaacaacccagcaaaaacattcaacgaatgaataatcccagttgtgagattcagattcatcatgatgaatgtgaacatcatcgaccaacatgagactc |
7963755 |
T |
|
| Q |
101 |
acgaataatgccctaacagtaacctgcttctgccaggtaggaa-caagttttccttcaaaccctttttcaatagaaaactcctccggttgatcatcgttc |
199 |
Q |
| |
|
||||||| | |||||| |||| | |||||||| |||||| | ||||||||||||| ||||||| | | ||| |||||| ||| ||||||||| |
|
|
| T |
7963756 |
acgaatataggcctaaccataacatttttctgccatataggaattgatttttccttcaaacactttttccacataaatctcctctaattgttcatcgttc |
7963855 |
T |
|
| Q |
200 |
gacaccgg |
207 |
Q |
| |
|
|||||||| |
|
|
| T |
7963856 |
gacaccgg |
7963863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University