View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4950_low_1 (Length: 569)
Name: NF4950_low_1
Description: NF4950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4950_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 20 - 562
Target Start/End: Original strand, 32240087 - 32240630
Alignment:
| Q |
20 |
ccatacactaccagcgggatccgcccttcttcgcttctgctgctactctctgtgggttttctggtttctgaggatatgtagctgggtgctacgcctgttc |
119 |
Q |
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| T |
32240087 |
ccatacactaccagcgggatccgcccttcttcgcttctgctgctgctctctgtgggttttctggtttctgaggatatgtagctgggtgctacgcctgttc |
32240186 |
T |
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| Q |
120 |
ctttttactttcnnnnnnnnnngtgtgtggtttataggcttctacggtgctctctggggtttccactcacagagcacctataaaaggtgttaaacttttg |
219 |
Q |
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|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32240187 |
ctttttactttcttttttttt-gtgtgtggtttataggcttctgcggtgctctctggggtttccactcacagagcacctataaaaggtgttaaacttttg |
32240285 |
T |
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| Q |
220 |
tcagaaggtttgaaaattttgtcttttgttcagagattctgaaatccccctgttttaatttaattttcacttggattggttgattaaacaatgcatttta |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32240286 |
tcagaaggtttgaaaattttgtcttttgttcagagattctgaaacccccctgttttaatttaattttcacttggattggttgattaaacaatgcatttta |
32240385 |
T |
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| Q |
320 |
tctgtcnnnnnnncactataaattttacttcatttgctggaaatttctggtttagggtatatgtggtttctgcaaaaggtaattaccatgtgtcaggaag |
419 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32240386 |
tctgtctttttttcactataaattttacttcatttgctggaaatttctggtttagggtatatgtggtttctgcaaaaggtaattaccatgtgtcaggaag |
32240485 |
T |
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| Q |
420 |
tttgaaactattggcaatgggtcagagatactgatttttcccttcttttcttttaattgattctgacactgcgtgtataaaagatgaaattcata--tgc |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32240486 |
tttgaaactattggcaatgggtcagagatactgatttttcccttcttttcttttaattgattctgacactgcgtgtataaaagatgaaattcatatgtgc |
32240585 |
T |
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| Q |
518 |
cctttttctctataaaatggtgcttgctgtgttcatttcatctca |
562 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32240586 |
cctttttctctataaaatggtgcttgctgtgttcatttcatctca |
32240630 |
T |
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