View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4950_low_2 (Length: 472)

Name: NF4950_low_2
Description: NF4950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4950_low_2
NF4950_low_2
[»] chr6 (11 HSPs)
chr6 (17-457)||(1914619-1915059)
chr6 (318-457)||(1905074-1905210)
chr6 (318-457)||(1909307-1909443)
chr6 (303-456)||(1899612-1899761)
chr6 (318-457)||(1893699-1893835)
chr6 (307-451)||(1881531-1881672)
chr6 (307-451)||(1888534-1888675)
chr6 (50-79)||(3338087-3338116)
chr6 (88-160)||(14782875-14782950)
chr6 (50-83)||(30813353-30813386)
chr6 (51-83)||(12481171-12481203)
[»] chr1 (3 HSPs)
chr1 (19-82)||(45425283-45425346)
chr1 (44-82)||(13999236-13999274)
chr1 (51-83)||(47551377-47551409)
[»] chr2 (5 HSPs)
chr2 (17-83)||(17767367-17767433)
chr2 (44-83)||(4604108-4604147)
chr2 (44-83)||(11798329-11798368)
chr2 (17-82)||(2763329-2763394)
chr2 (17-82)||(7581895-7581960)
[»] chr4 (5 HSPs)
chr4 (101-158)||(38434922-38434982)
chr4 (14-82)||(5814591-5814659)
chr4 (22-82)||(12716925-12716985)
chr4 (50-82)||(15182755-15182787)
chr4 (51-83)||(28837353-28837385)
[»] chr3 (5 HSPs)
chr3 (41-82)||(25084296-25084337)
chr3 (22-83)||(29017097-29017158)
chr3 (14-83)||(53962363-53962432)
chr3 (51-83)||(33637691-33637723)
chr3 (51-83)||(48652249-48652281)
[»] chr7 (1 HSPs)
chr7 (41-73)||(44972232-44972264)
[»] chr5 (1 HSPs)
chr5 (50-82)||(35402320-35402352)


Alignment Details
Target: chr6 (Bit Score: 361; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 17 - 457
Target Start/End: Complemental strand, 1915059 - 1914619
Alignment:
17 tcaatgttgcagatccgaggacgcgaatattatagagacttgaatatattcatatttgtaggcatagccgtatagttactctgacattttatgctattaa 116  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1915059 tcaatattgcagatccgaggacgcgaatattatagagacttgaatatattcatatttgtaggcatagccgtatagttactctgacattttatgctattaa 1914960  T
117 cgataatgtaagtgtgtttacagattcatccgttttatttttagtgtactttatcaaattaaatgaatataatctatttttgtctnnnnnnnntcgaact 216  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||        |||||||    
1914959 cgatgatgtaagtgtgtttacagattcacccgttttatttttagtgtactttatcaaattaaatgaatatcatctatttttgtctaaaaaaaatcgaact 1914860  T
217 tagtattttcatatataccttgttttggctaaatgtannnnnnnngtgcatgtatcttacgattcatatgtttataaacattttcaatttgataaccatg 316  Q
    |||||||||||||||||||||||||| ||||||||||        ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
1914859 tagtattttcatatataccttgtttttgctaaatgtattttttttgtgcatgtatcttacgattcatatgcttataaacattttcaatttgataaccatg 1914760  T
317 tttttaaacatttccatctattttcttttcaaaagtttctgctctatagctttgcaaaagaggtgcattctcagtagatggtgactgcaagctaccacca 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
1914759 tttttaaacatttccatctattttcttttcaaaagtttctgctctattgctttgcaaaagaggtgcattctcagtagatggtgactgcaagctaccacca 1914660  T
417 acatcttcctctatctcttctgttgctttgccccataatac 457  Q
    ||||||||||||||||||||||| |||||||||||||||||    
1914659 acatcttcctctatctcttctgtagctttgccccataatac 1914619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 318 - 457
Target Start/End: Complemental strand, 1905210 - 1905074
Alignment:
318 ttttaaacatttccatctattttcttttcaaaagtttctgctctatagctttgcaaaagaggtgcattctcagtagatggtgactgcaagctaccaccaa 417  Q
    |||||||||||||||| | |||| |||||||||||||  | |||| |||||||||||||||||||||||||| |||||||||||| |||   || |||||    
1905210 ttttaaacatttccatttgttttattttcaaaagtttgagttctagagctttgcaaaagaggtgcattctcattagatggtgactccaa---actaccaa 1905114  T
418 catcttcctctatctcttctgttgctttgccccataatac 457  Q
    |||||||||||||||||||||| |||||||||||||||||    
1905113 catcttcctctatctcttctgtagctttgccccataatac 1905074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 318 - 457
Target Start/End: Complemental strand, 1909443 - 1909307
Alignment:
318 ttttaaacatttccatctattttcttttcaaaagtttctgctctatagctttgcaaaagaggtgcattctcagtagatggtgactgcaagctaccaccaa 417  Q
    |||||||||||||||| | |||| |||||||||||||  | |||| |||||||||||||||||||||||||| |||||||||||| |||   || |||||    
1909443 ttttaaacatttccatttgttttattttcaaaagtttgagttctagagctttgcaaaagaggtgcattctcattagatggtgactccaa---actaccaa 1909347  T
418 catcttcctctatctcttctgttgctttgccccataatac 457  Q
    |||||||||||||||||||||| |||||||||||||||||    
1909346 catcttcctctatctcttctgtagctttgccccataatac 1909307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 303 - 456
Target Start/End: Complemental strand, 1899761 - 1899612
Alignment:
303 atttgataaccatgtttttaaacatttccatctattttcttttcaaaagtttctgctctatagctttgcaaaagaggtgcattctcagtagatggtgact 402  Q
    ||||||||||||| |||| ||||| |||||| | |||| || |||||||| |  | |||| |||||||||||||||||||||||||| ||||||||||||    
1899761 atttgataaccatatttt-aaacagttccatttgttttattgtcaaaagtgtgagttctagagctttgcaaaagaggtgcattctcattagatggtgact 1899663  T
403 gcaagctaccaccaacatcttcctctatctcttctgttgctttgccccataata 456  Q
     |||   || ||||||||||||||||||||||||||| ||||||||||||||||    
1899662 ccaa---actaccaacatcttcctctatctcttctgtagctttgccccataata 1899612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 318 - 457
Target Start/End: Complemental strand, 1893835 - 1893699
Alignment:
318 ttttaaacatttccatctattttcttttcaaaagtttctgctctatagctttgcaaaagaggtgcattctcagtagatggtgactgcaagctaccaccaa 417  Q
    ||||||| |||||||| | ||||||||||||| ||||| | |||||| ||||| |||||||||||||||||  ||||||||||||  | |||   |||||    
1893835 ttttaaatatttccatttgttttcttttcaaatgtttcagttctataactttgtaaaagaggtgcattctctatagatggtgactctaggct---accaa 1893739  T
418 catcttcctctatctcttctgttgctttgccccataatac 457  Q
    ||||||||||||||| ||||||||||||||||||||||||    
1893738 catcttcctctatcttttctgttgctttgccccataatac 1893699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 307 - 451
Target Start/End: Complemental strand, 1881672 - 1881531
Alignment:
307 gataaccatgtttttaaacatttccatctattttcttttcaaaagtttctgctctatagctttgcaaaagaggtgcattctcagtagatggtgactgcaa 406  Q
    ||||||| | ||||||||||||||||| | |||| ||||||||||||||   |||| |||||||||| ||||||||||| || |||||||||||||   |    
1881672 gataaccttatttttaaacatttccatttgttttgttttcaaaagtttcaattctacagctttgcaatagaggtgcattatctgtagatggtgactctga 1881573  T
407 gctaccaccaacatcttcctctatctcttctgttgctttgcccca 451  Q
    |||   ||||||||||||||||||||||||| ||| |||||||||    
1881572 gct---accaacatcttcctctatctcttctcttgatttgcccca 1881531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 307 - 451
Target Start/End: Complemental strand, 1888675 - 1888534
Alignment:
307 gataaccatgtttttaaacatttccatctattttcttttcaaaagtttctgctctatagctttgcaaaagaggtgcattctcagtagatggtgactgcaa 406  Q
    ||||||||| ||| |||||| |||||| | |||| ||||||||||||||   |||| |||||||||| ||||||||||| || |||||||||||||   |    
1888675 gataaccatatttctaaacaattccatttgttttgttttcaaaagtttcaattctacagctttgcaatagaggtgcattatctgtagatggtgactctga 1888576  T
407 gctaccaccaacatcttcctctatctcttctgttgctttgcccca 451  Q
    |||   ||||||||||||||||||||||||| ||| |||||||||    
1888575 gct---accaacatcttcctctatctcttctcttgatttgcccca 1888534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 79
Target Start/End: Original strand, 3338087 - 3338116
Alignment:
50 agagacttgaatatattcatatttgtaggc 79  Q
    ||||||||||||||||||||||||||||||    
3338087 agagacttgaatatattcatatttgtaggc 3338116  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 160
Target Start/End: Complemental strand, 14782950 - 14782875
Alignment:
88 atagttactctgacattttatgctattaac---gataatgtaagtgtgtttacagattcatccgttttatttttag 160  Q
    |||| |||| || |||||||||||||||||   |||||||| ||| |||| |||||||||||| |||| |||||||    
14782950 ataggtactttgccattttatgctattaacatggataatgtgagtttgttcacagattcatcctttttgtttttag 14782875  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 30813353 - 30813386
Alignment:
50 agagacttgaatatattcatatttgtaggcatag 83  Q
    ||||||||||||||| ||||||||||||||||||    
30813353 agagacttgaatatagtcatatttgtaggcatag 30813386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 12481203 - 12481171
Alignment:
51 gagacttgaatatattcatatttgtaggcatag 83  Q
    |||||||||||||| ||||||||||||||||||    
12481203 gagacttgaatatagtcatatttgtaggcatag 12481171  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 45425346 - 45425283
Alignment:
19 aatgttgcagatccgaggacgcgaatattatagagacttgaatatattcatatttgtaggcata 82  Q
    ||||||| |||||| | |||  |||||||||||||| ||||||||| |||||||||||||||||    
45425346 aatgttgtagatcctaagacatgaatattatagagaattgaatataatcatatttgtaggcata 45425283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 13999236 - 13999274
Alignment:
44 tattatagagacttgaatatattcatatttgtaggcata 82  Q
    |||||| |||||||||||||| |||||||||||||||||    
13999236 tattatggagacttgaatatagtcatatttgtaggcata 13999274  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 47551377 - 47551409
Alignment:
51 gagacttgaatatattcatatttgtaggcatag 83  Q
    |||||||||||||| ||||||||||||||||||    
47551377 gagacttgaatatagtcatatttgtaggcatag 47551409  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 17767433 - 17767367
Alignment:
17 tcaatgttgcagatccgaggacgcgaatattatagagacttgaatatattcatatttgtaggcatag 83  Q
    |||| ||||||||||||  |||  || |||||| |||||||||||||| ||||||||||||||||||    
17767433 tcaacgttgcagatccggagacatgagtattattgagacttgaatatagtcatatttgtaggcatag 17767367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 83
Target Start/End: Complemental strand, 4604147 - 4604108
Alignment:
44 tattatagagacttgaatatattcatatttgtaggcatag 83  Q
    |||| |||||||||||||||| ||||||||||||||||||    
4604147 tattctagagacttgaatatagtcatatttgtaggcatag 4604108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 83
Target Start/End: Complemental strand, 11798368 - 11798329
Alignment:
44 tattatagagacttgaatatattcatatttgtaggcatag 83  Q
    |||||| |||||||||||||| ||||||||||||||||||    
11798368 tattatggagacttgaatatagtcatatttgtaggcatag 11798329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 2763394 - 2763329
Alignment:
17 tcaatgttgcagatccgaggacgcgaatattatagagacttgaatatattcatatttgtaggcata 82  Q
    |||| ||||||||||||| |||  || |||| |||||| ||||||||| |||||||| ||||||||    
2763394 tcaacgttgcagatccgaagacatgagtattttagagatttgaatataatcatatttataggcata 2763329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 7581960 - 7581895
Alignment:
17 tcaatgttgcagatccgaggacgcgaatattatagagacttgaatatattcatatttgtaggcata 82  Q
    |||| |||| |||||||| |||  ||||||| | ||||||| |||||| |||||||||||||||||    
7581960 tcaacgttgtagatccgaagacatgaatattctggagacttcaatataatcatatttgtaggcata 7581895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 38434922 - 38434982
Alignment:
101 cattttatgctattaac---gataatgtaagtgtgtttacagattcatccgttttattttt 158  Q
    |||||||||||||||||   ||| |||| ||| ||||||||||||||||| ||||||||||    
38434922 cattttatgctattaacatggatgatgtgagtttgtttacagattcatcctttttattttt 38434982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 5814591 - 5814659
Alignment:
14 tcatcaatgttgcagatccgaggacgcgaatattatagagacttgaatatattcatatttgtaggcata 82  Q
    ||||||| |||||||||||   |||  || |||| | |||||||||||||| |||||||||||||||||    
5814591 tcatcaacgttgcagatccagagacatgagtattctggagacttgaatatagtcatatttgtaggcata 5814659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 12716985 - 12716925
Alignment:
22 gttgcagatccgaggacgcgaatattatagagacttgaatatattcatatttgtaggcata 82  Q
    ||||||||||| | |||  ||||||| ||||||||| |||||| |||||| ||||||||||    
12716985 gttgcagatccaaagacatgaatattctagagactttaatatagtcatatgtgtaggcata 12716925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 15182755 - 15182787
Alignment:
50 agagacttgaatatattcatatttgtaggcata 82  Q
    ||||||||||||||||||| |||||||||||||    
15182755 agagacttgaatatattcacatttgtaggcata 15182787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 28837353 - 28837385
Alignment:
51 gagacttgaatatattcatatttgtaggcatag 83  Q
    |||||||||||||| ||||||||||||||||||    
28837353 gagacttgaatatagtcatatttgtaggcatag 28837385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 25084296 - 25084337
Alignment:
41 gaatattatagagacttgaatatattcatatttgtaggcata 82  Q
    ||||||| | |||||||||||||| |||||||||||||||||    
25084296 gaatattctggagacttgaatataatcatatttgtaggcata 25084337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 29017158 - 29017097
Alignment:
22 gttgcagatccgaggacgcgaatattatagagacttgaatatattcatatttgtaggcatag 83  Q
    ||||||||||||| |||  | ||||| |||||||||||||||| |||||||| || ||||||    
29017158 gttgcagatccgaagacatgtatattctagagacttgaatatagtcatatttatatgcatag 29017097  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 53962363 - 53962432
Alignment:
14 tcatcaatgttgcagatccgaggacgcgaatattatagagacttgaatatattcatatttgtaggcatag 83  Q
    ||||||| |||| ||||| | ||||  |||||||  | ||||||||||||| ||||||||||||||||||    
53962363 tcatcaacgttggagatcaggggacatgaatatttcaaagacttgaatatagtcatatttgtaggcatag 53962432  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 33637691 - 33637723
Alignment:
51 gagacttgaatatattcatatttgtaggcatag 83  Q
    |||||||||||||| ||||||||||||||||||    
33637691 gagacttgaatatagtcatatttgtaggcatag 33637723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 48652281 - 48652249
Alignment:
51 gagacttgaatatattcatatttgtaggcatag 83  Q
    |||||||||||||| ||||||||||||||||||    
48652281 gagacttgaatatagtcatatttgtaggcatag 48652249  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 44972264 - 44972232
Alignment:
41 gaatattatagagacttgaatatattcatattt 73  Q
    |||||||||||||||||||||||| ||||||||    
44972264 gaatattatagagacttgaatataatcatattt 44972232  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 35402320 - 35402352
Alignment:
50 agagacttgaatatattcatatttgtaggcata 82  Q
    ||||||||||||||| |||||||||||||||||    
35402320 agagacttgaatatagtcatatttgtaggcata 35402352  T

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