View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4950_low_6 (Length: 340)

Name: NF4950_low_6
Description: NF4950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4950_low_6
NF4950_low_6
[»] chr8 (5 HSPs)
chr8 (13-323)||(292175-292485)
chr8 (13-323)||(9507003-9507313)
chr8 (13-184)||(268964-269138)
chr8 (13-184)||(646783-646957)
chr8 (13-184)||(832518-832692)
[»] chr7 (1 HSPs)
chr7 (13-310)||(12860067-12860364)
[»] chr6 (2 HSPs)
chr6 (14-323)||(19888853-19889159)
chr6 (25-323)||(19823775-19824070)
[»] chr3 (3 HSPs)
chr3 (13-295)||(2294783-2295071)
chr3 (13-305)||(17777786-17778075)
chr3 (13-305)||(19079087-19079376)
[»] chr2 (5 HSPs)
chr2 (13-323)||(29561189-29561496)
chr2 (13-197)||(19388670-19388848)
chr2 (13-184)||(18599881-18600046)
chr2 (144-184)||(18605506-18605546)
chr2 (13-92)||(18605381-18605460)
[»] chr1 (4 HSPs)
chr1 (13-323)||(164352-164659)
chr1 (13-276)||(138999-139259)
chr1 (214-290)||(18215159-18215235)
chr1 (13-107)||(18214961-18215055)


Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 13 - 323
Target Start/End: Original strand, 292175 - 292485
Alignment:
Q  13 aaaattaaacagattagtggagaaaactcaagttgccatggagcttccaatagatcctttgtgaaagatataaactatccagcactggtgattcctgttg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  292175 aaaattaaacagattagtggagaaaactcaagttgccatggagcttccaatagatcctttgtgaaagatataaactatccagcactggtgattcctgttg 292274  T
Q  113 agtctcataaaaatttcaatgtcaagattcatagaacagttacaaatgttggctctcccaactcaagctacacagctactgtcatcccaattcaaaatat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  292275 agtctcataaaaatttcaatgtcaagattcatagaacagttacaaatgttggctctcccaactcaagctacacagctactgtcatcccaattcaaaatat 292374  T
Q  213 aaagattactgtggagccaaaaattctctcattcagatcattgaatgagaaacaatcatttgttgtcactgttgttgggggagcagaatcaaaacaaatg 312  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  292375 aaagattagtgtggagccaaaaattctctcattcagatcattgaatgagaaacaatcatttgttgtcactgttgttgggggagcagaatcaaaacaaatg 292474  T
Q  313 gtgtcttcctc 323  Q
    |||||||||||    
T  292475 gtgtcttcctc 292485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 323
Target Start/End: Original strand, 9507003 - 9507313
Alignment:
Q  13 aaaattaaacagattagtggagaaaactcaagttgccatggagcttccaatagatcctttgtgaaagatataaactatccagcactggtgattcctgttg 112  Q
    ||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9507003 aaaattaaacttattagtggagaaaactcaagttgccatagagcttccaatagatcctttgtgaaagatataaactatccagcactagtgattcctgttg 9507102  T
Q  113 agtctcataaaaatttcaatgtcaagattcatagaacagttacaaatgttggctctcccaactcaagctacacagctactgtcatcccaattcaaaatat 212  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| ||||||||||||| |||||||    
T  9507103 agtctcagaaaagtttcaatgtcaagattcatagaacagttacaaatgttggctctcccaactcaaggtacatggctaatgtcatcccaattgaaaatat 9507202  T
Q  213 aaagattactgtggagccaaaaattctctcattcagatcattgaatgagaaacaatcatttgttgtcactgttgttgggggagcagaatcaaaacaaatg 312  Q
    ||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||| ||||    
T  9507203 aagcattagtgtggagccaaaaattctctcattcagatcattgaatgagaaacaatcatttgttgtcactgctgtcgggggagcagactcaaaacgaatg 9507302  T
Q  313 gtgtcttcctc 323  Q
    |||||||||||    
T  9507303 gtgtcttcctc 9507313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 13 - 184
Target Start/End: Original strand, 268964 - 269138
Alignment:
Q  13 aaaattaaacagattagtggagaaaactcaagttgccatggagcttccaatagatcctttgtgaaagatataaactatccagcactggtgattcctgttg 112  Q
    ||||| ||||||||||||||||| || | ||||||||| | | | ||||| || ||||| ||||||||||| ||||||||| || ||||||||||||||     
T  268964 aaaatcaaacagattagtggagataatttaagttgccacgtaacatccaaaaggtccttggtgaaagatattaactatccatcaatggtgattcctgtta 269063  T
Q  113 agtctcataaaaa---tttcaatgtcaagattcatagaacagttacaaatgttggctctcccaactcaagctaca 184  Q
     |||| || | ||   |||||||||||| ||||||||||||||||| |||||||||| |  |||||||| |||||    
T  269064 ggtcttatcacaagcgtttcaatgtcaatattcatagaacagttacgaatgttggctttttcaactcaacctaca 269138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 646957 - 646783
Alignment:
Q  13 aaaattaaacagattagtggagaaaactcaagttgccatggagcttccaatagatcctttgtgaaagatataaactatccagcactggtgattcctgttg 112  Q
    ||||| ||||||||||||||||| || | ||||||||| | | | ||||| || ||||| ||||||||||| ||||||||| || ||||||||||||||     
T  646957 aaaatcaaacagattagtggagataatttaagttgccacgtaacatccaaaaggtccttggtgaaagatattaactatccatcaatggtgattcctgtta 646858  T
Q  113 agtctcataaaaa---tttcaatgtcaagattcatagaacagttacaaatgttggctctcccaactcaagctaca 184  Q
     |||| || | ||   |||||||||||| ||||||||||||||||| |||||||||| |  |||||||| |||||    
T  646857 ggtcttatcacaagcgtttcaatgtcaatattcatagaacagttacgaatgttggctttttcaactcaacctaca 646783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 832692 - 832518
Alignment:
Q  13 aaaattaaacagattagtggagaaaactcaagttgccatggagcttccaatagatcctttgtgaaagatataaactatccagcactggtgattcctgttg 112  Q
    ||||| ||||||||||||||||| || | ||||||||| | | | ||||| || ||||| ||||||||||| ||||||||| || ||||||||||||||     
T  832692 aaaatcaaacagattagtggagataatttaagttgccacgtaacatccaaaaggtccttggtgaaagatattaactatccatcaatggtgattcctgtta 832593  T
Q  113 agtctcataaaaa---tttcaatgtcaagattcatagaacagttacaaatgttggctctcccaactcaagctaca 184  Q
     |||| || | ||   |||||||||||| ||||||||||||||||| |||||||||| |  |||||||| |||||    
T  832592 ggtcttatcacaagcgtttcaatgtcaatattcatagaacagttacgaatgttggctttttcaactcaacctaca 832518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 13 - 310
Target Start/End: Complemental strand, 12860364 - 12860067
Alignment:
Q  13 aaaattaaacagattagtggagaaaactcaagttgccatggagcttccaatagatcctttgtgaaagatataaactatccagcactggtgattcctgttg 112  Q
    |||||||| |||||||||||| ||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  12860364 aaaattaagcagattagtggacaaaactcaagttgccgtggagcttccaacagatcttttgtgaaagatataaactatcctgcactggtgattcctgttg 12860265  T
Q  113 agtctcataaaaatttcaatgtcaagattcatagaacagttacaaatgttggctctcccaactcaagctacacagctactgtcatcccaattcaaaatat 212  Q
     | | ||| || | || ||||| |||||||||||||| |||||||||||||||||||| | ||| |||||||  ||||| ||||||||||||||||||||    
T  12860264 ggccacatgaacaattgaatgtaaagattcatagaaccgttacaaatgttggctctccaacctcgagctacaaggctaccgtcatcccaattcaaaatat 12860165  T
Q  213 aaagattactgtggagccaaaaattctctcattcagatcattgaatgagaaacaatcatttgttgtcactgttgttgggggagcagaatcaaaacaaa 310  Q
     |||||||  ||||| ||  ||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||    
T  12860164 caagattatcgtggaaccggaaattctctcattcaaatcattaaatgagaaacaatcatttgttgtcactgttgtcgggagagcagaatcaaatcaaa 12860067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 14 - 323
Target Start/End: Original strand, 19888853 - 19889159
Alignment:
Q  14 aaattaaacagattagtggagaaaactcaagttgccatggagcttccaatagatcctttgtgaaagatataaactatccagcactggtgattcctgttga 113  Q
    |||||||||| |||||||||||  | |||||||||||||  || ||||| |||||||| |||||||||||||||||||| ||| ||||  ||| |||       
T  19888853 aaattaaacaaattagtggagatgattcaagttgccatgatgcatccaaaagatccttggtgaaagatataaactatcctgcaatggtatttcttgta-- 19888950  T
Q  114 gtctcataaaaatttcaatgtcaagattcatagaacagttacaaatgttggctctcccaactcaagctacacagctactgtcatcc--ca-attcaaaat 210  Q
        ||||   |||||||||||||||||||||||||||| || |||||||||| || |||||||| ||||| ||||||| | ||||  || | || |||     
T  19888951 ----cataggcatttcaatgtcaagattcatagaacagtcactaatgttggctttcacaactcaacctacaaagctactcttatccatcataatccaaaa 19889046  T
Q  211 ataaagattactgtggagccaaaaattctctcattcagatcattgaatgagaaacaatcatttgttgtcactgttgttgggggagcagaatcaaaacaaa 310  Q
     | ||||||| ||| || |||||||||||||||||||||||||| || ||||||||||||||||||||||| ||| |||||| |||| ||||||| ||||    
T  19889047 gtcaagattagtgtcgaaccaaaaattctctcattcagatcattaaacgagaaacaatcatttgttgtcacagtttttggggaagcaaaatcaaatcaaa 19889146  T
Q  311 tggtgtcttcctc 323  Q
      |||| ||||||    
T  19889147 ctgtgtgttcctc 19889159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 25 - 323
Target Start/End: Original strand, 19823775 - 19824070
Alignment:
Q  25 attagtggagaaaactcaagttgccatggagcttccaatagatcctttgtgaaagatataaactatccagcactggtgattcctgttgagtctcataaaa 124  Q
    |||||||||||  | |||||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| ||||  ||| |||       ||||       
T  19823775 attagtggagatgattcaagttgccatggtgcatccaaaagatccttggtgaaagatataaactatcctgcaatggtatttcttgta------cataggc 19823868  T
Q  125 atttcaatgtcaagattcatagaacagttacaaatgttggctctcccaactcaagctacacagctactgtcatcc--ca-attcaaaatataaagattac 221  Q
    |||||||||||||||||||||||||||| ||||||||||||| || |||||||| |||||  |||||| | ||||  || | || |||  | |||||||     
T  19823869 atttcaatgtcaagattcatagaacagtcacaaatgttggctttcacaactcaacctacaaggctactcttatccatcataatccaaaagtcaagattag 19823968  T
Q  222 tgtggagccaaaaattctctcattcagatcattgaatgagaaacaatcatttgttgtcactgttgttgggggagcagaatcaaaacaaatggtgtcttcc 321  Q
    ||| || |||||||||||||||||||||||||| || ||||||||||||| ||||||||| ||| |||||| |||| ||||||| ||||  |||| ||||    
T  19823969 tgttgaaccaaaaattctctcattcagatcattaaacgagaaacaatcatatgttgtcaccgtttttggggaagcaaaatcaaatcaaactgtgttttcc 19824068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 7e-43; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 13 - 295
Target Start/End: Original strand, 2294783 - 2295071
Alignment:
Q  13 aaaattaaacagattagtggagaaaactcaagttgccatggagcttccaatagatcctttgtgaaagatataaactatccagcactggtgattcctgttg 112  Q
    ||||||||||| || ||||||||||| | |||||| |||| ||||||||  ||| |||| || |||||||||||||| || ||| |||||||||| ||||    
T  2294783 aaaattaaacaaataagtggagaaaatttaagttgtcatgaagcttccagaagagccttggtcaaagatataaactaccctgcaatggtgattccggttg 2294882  T
Q  113 ag---tctcataaaaatttcaatgtcaagattcatagaacagttacaaatgttggctctcccaactcaagctacacagctactgtcatc---ccaattca 206  Q
    ||   | |||||| |  ||| ||| ||| |||||||||||||| ||||||||||||| ||||||||||| |||||  |||| | |||||   |  | ||     
T  2294883 agccttatcataagagcttccatgccaaaattcatagaacagtgacaaatgttggctttcccaactcaacctacaaggctattctcatcaatcataatct 2294982  T
Q  207 aaatataaagattactgtggagccaaaaattctctcattcagatcattgaatgagaaacaatcatttgttgtcactgttgttgggggag 295  Q
    ||| || |||||||||||| | |||||| |||||||||||| |||||| |||||||||||||||||| |||||||| ||||||| ||||    
T  2294983 aaaaatcaagattactgtgaaaccaaaacttctctcattcacatcattaaatgagaaacaatcatttattgtcactattgttggtggag 2295071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 13 - 305
Target Start/End: Complemental strand, 17778075 - 17777786
Alignment:
Q  13 aaaattaaacagattagtggagaaaactcaagttgccatggagcttccaatagatcctttgtgaaagatataaactatccagcactggtgattcctgttg 112  Q
    ||||| ||||| ||||||||||| || || |||||||||  |||||| ||  |||| || |||||||||||||||||||||||| |||||||||| ||      
T  17778075 aaaataaaacaaattagtggagataattcgagttgccatcaagcttcaaaatgatctttggtgaaagatataaactatccagcaatggtgattccggta- 17777977  T
Q  113 agtctcataaaaatttcaatgtcaagattcatagaacagttacaaatgttggctctcccaactcaagctacacagctactgtcatcc----caattcaaa 208  Q
         |||||| ||||||| |||||||||||||||||||||||||||||||| | || |||||||| |||||   ||||| | ||||    |||||||||    
T  17777976 -----cataaacatttcaacgtcaagattcatagaacagttacaaatgttggttttctcaactcaacctacaagactactcttatccaccacaattcaaa 17777882  T
Q  209 atataaagattactgtggagccaaaaattctctcattcagatcattgaatgagaaacaatcatttgttgtcactgttgttgggggagcagaatcaaa 305  Q
    | || ||||||| |||||| |||||| |||| |||||||  |||||  |||| ||| |||||||||||||||||||| |||||| |||| |||||||    
T  17777881 a-atcaagattagtgtggaaccaaaacttctatcattcaagtcattacatgaaaaaaaatcatttgttgtcactgttattggggaagcaaaatcaaa 17777786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 13 - 305
Target Start/End: Complemental strand, 19079376 - 19079087
Alignment:
Q  13 aaaattaaacagattagtggagaaaactcaagttgccatggagcttccaatagatcctttgtgaaagatataaactatccagcactggtgattcctgttg 112  Q
    ||||| ||||| ||||||||||| || || |||||||||  |||||| ||  |||| || |||||||||||||||||||||||| |||||||||| ||      
T  19079376 aaaataaaacaaattagtggagataattcgagttgccatcaagcttcaaaatgatctttggtgaaagatataaactatccagcaatggtgattccggta- 19079278  T
Q  113 agtctcataaaaatttcaatgtcaagattcatagaacagttacaaatgttggctctcccaactcaagctacacagctactgtcatcc----caattcaaa 208  Q
         |||||| ||||||| |||||||||||||||||||||||||||||||| | || |||||||| |||||   ||||| | ||||    |||||||||    
T  19079277 -----cataaacatttcaacgtcaagattcatagaacagttacaaatgttggttttctcaactcaacctacaagactactcttatccaccacaattcaaa 19079183  T
Q  209 atataaagattactgtggagccaaaaattctctcattcagatcattgaatgagaaacaatcatttgttgtcactgttgttgggggagcagaatcaaa 305  Q
    | || ||||||| |||||| |||||| |||| |||||||  |||||  |||| ||| |||||||||||||||||||| |||||| |||| |||||||    
T  19079182 a-atcaagattagtgtggaaccaaaacttctatcattcaagtcattacatgaaaaaaaatcatttgttgtcactgttattggggaagcaaaatcaaa 19079087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 13 - 323
Target Start/End: Original strand, 29561189 - 29561496
Alignment:
Q  13 aaaattaaacagattagtggagaaaactcaagttgccatggagcttccaatagatcctttgtgaaagatataaactatccagcactggtgattcctgttg 112  Q
    ||||| ||||| |||| |||||| || || |||||||||  ||| || || ||||| || |||||||||||||||||||| ||| |||||||||||||      
T  29561189 aaaataaaacaaattactggagataattcgagttgccatcaagcgtcgaaaagatctttggtgaaagatataaactatcctgcaatggtgattcctgtat 29561288  T
Q  113 agtctcataaaaatttcaatgtcaagattcatagaacagttacaaatgttggctctcccaactcaagctacacagctactgtcatcc----caattcaaa 208  Q
    |      |||  |||||||||||||||||||||||||||||||||||||||| | || |||||||| |||||  |||||| ||||||     ||||||||    
T  29561289 a------taagcatttcaatgtcaagattcatagaacagttacaaatgttggttttcacaactcaacctacaaggctactctcatccatcataattcaaa 29561382  T
Q  209 atataaagattactgtggagccaaaaattctctcattcagatcattgaatgagaaacaatcatttgttgtcactgttgttgggggagcagaatcaaaaca 308  Q
    | || ||||||| |||||| || ||| |||| |||||||  |||||  |||||||| |||| ||| | |||||||||||||||| |||| ||||||| ||    
T  29561383 a-atcaagattagtgtggaacctaaacttctatcattcaagtcattacatgagaaaaaatcgtttatcgtcactgttgttggggaagcaaaatcaaatca 29561481  T
Q  309 aatggtgtcttcctc 323  Q
    ||  |||| ||||||    
T  29561482 aactgtgttttcctc 29561496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 19388670 - 19388848
Alignment:
Q  13 aaaattaaacagattagtggagaaaactcaagttgccatggagcttccaatagatcctttgtgaaagatataaactatccagcactggtgattcctgttg 112  Q
    ||||||||||| ||||||||||| || ||||||||||||||| ||||  | ||||| || |||||||||||||| ||||| ||| | ||| ||||  |      
T  19388670 aaaattaaacaaattagtggagataattcaagttgccatggaacttctgaaagatcattggtgaaagatataaattatcctgcaattgtggttccaat-- 19388767  T
Q  113 agtctcataaaaatttcaatgtcaagattcatagaacagttacaaatgttggctctcccaactcaagctacacagctactgtcat 197  Q
         | |||  ||||  |||| ||| ||||||||||||||||||||||||||| ||||||||||| |||||  |||||| ||||    
T  19388768 ----acttaagcatttgcatgtaaaggttcatagaacagttacaaatgttggctttcccaactcaacctacaaggctactctcat 19388848  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 184
Target Start/End: Original strand, 18599881 - 18600046
Alignment:
Q  13 aaaattaaacagattagtggagaaaactcaagttgccatggagcttccaatagatcctttgtgaaagatataaactatccagcactggtgattcctgttg 112  Q
    ||||||||||| ||||||||||| || ||||||||||||||| ||||  | |||||  | |||||||||||||| ||||| ||  | ||||||||  |      
T  18599881 aaaattaaacaaattagtggagataattcaagttgccatggaacttctgaaagatcagtggtgaaagatataaattatcctgctattgtgattccaata- 18599979  T
Q  113 agtctcataaaaatttcaatgtcaagattcatagaacagttacaaatgttggctctcccaactcaagctaca 184  Q
         | |||  ||||| ||| |||| ||||||||||||||||||||||||||| ||||||||||| |||||    
T  18599980 -----cttaagcatttccatgccaaggttcatagaacagttacaaatgttggctttcccaactcaacctaca 18600046  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 18605506 - 18605546
Alignment:
Q  144 tagaacagttacaaatgttggctctcccaactcaagctaca 184  Q
    ||||||||||||||||||||||| ||||||||||| |||||    
T  18605506 tagaacagttacaaatgttggctttcccaactcaacctaca 18605546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 18605381 - 18605460
Alignment:
Q  13 aaaattaaacagattagtggagaaaactcaagttgccatggagcttccaatagatcctttgtgaaagatataaactatcc 92  Q
    ||||||||||| ||||||||||| || |||||||| |||||| ||||  | ||||  || |||||||||||||| |||||    
T  18605381 aaaattaaacaaattagtggagataattcaagttgtcatggaacttctgaaagattattggtgaaagatataaattatcc 18605460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 13 - 323
Target Start/End: Complemental strand, 164659 - 164352
Alignment:
Q  13 aaaattaaacagattagtggagaaaactcaagttgccatggagcttccaatagatcctttgtgaaagatataaactatccagcactggtgattcctgttg 112  Q
    |||||||||||||| |||||||| || ||||||||||||| || | |  | ||||| || |||||||||||||||||||| ||| |||| |||||||       
T  164659 aaaattaaacagataagtggagataattcaagttgccatgaagatcctgaaagatcattggtgaaagatataaactatcctgcaatggttattcctg--- 164563  T
Q  113 agtctcataaaaatttcaatgtcaagattcatagaacagttacaaatgttggctctcccaactcaagctacacagctactgtcatcc--ca--attcaaa 208  Q
       | |||||  |||||||||| ||| ||||||||||||| ||||||||||||| ||| ||||||| ||||| ||||||| ||| ||  ||  || | ||    
T  164562 ---cacataagcatttcaatgtaaaggttcatagaacagtcacaaatgttggctttcctaactcaacctacaaagctactctcagccatcatgatccgaa 164466  T
Q  209 atataaagattactgtggagccaaaaattctctcattcagatcattgaatgagaaacaatcatttgttgtcactgttgttgggggagcagaatcaaaaca 308  Q
    | || ||||||| |||||| |||||| ||||||| |||| |||||| ||||||||||||||||||||| | | |||||||||  ||| | ||||||| ||    
T  164465 a-atcaagattagtgtggaaccaaaatttctctctttcaaatcattaaatgagaaacaatcatttgttattattgttgttggaagagtaaaatcaaatca 164367  T
Q  309 aatggtgtcttcctc 323  Q
    ||  |||| ||||||    
T  164366 aactgtgttttcctc 164352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 276
Target Start/End: Complemental strand, 139259 - 138999
Alignment:
Q  13 aaaattaaacagattagtggagaaaactcaagttgccatggagcttccaatagatcctttgtgaaagatataaactatccagcactggtgattcctgttg 112  Q
    ||||||||||||||||||||||| || |||||||||||||||  | |  | ||||| || |||||||||||||||||||| ||| |||| ||||||||      
T  139259 aaaattaaacagattagtggagataattcaagttgccatggatatcctgaaagatcattggtgaaagatataaactatcctgcaatggttattcctgt-- 139162  T
Q  113 agtctcataaaaatttcaatgtcaagattcatagaacagttacaaatgttggctctcccaactcaagctacacagctactgtcatcc--ca--attcaaa 208  Q
         |||||  |||||||||| ||| ||||||||||||| ||||||||||||| ||| ||||||| ||||| ||||||| ||| ||  ||  || ||||    
T  139161 ----acataagcatttcaatgtaaaggttcatagaacagtcacaaatgttggctttcctaactcaacctacaaagctactctcagccatcatgatccaaa 139066  T
Q  209 atataaagattactgtggagccaaaaattctctcattcagatcattgaatgagaaacaatcatttgtt 276  Q
    | || ||||||| |||||| |||||| |||| || |||| ||||||  ||||||||||||||||||||    
T  139065 a-atcaagattagtgtggaaccaaaatttctgtctttcaaatcattatatgagaaacaatcatttgtt 138999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 214 - 290
Target Start/End: Original strand, 18215159 - 18215235
Alignment:
Q  214 aagattactgtggagccaaaaattctctcattcagatcattgaatgagaaacaatcatttgttgtcactgttgttgg 290  Q
    |||||||  ||||| ||||||  ||||||||||| |||||| |||||||||||||| |||||| |||||||| ||||    
T  18215159 aagattagagtggaaccaaaatgtctctcattcaaatcattaaatgagaaacaatcctttgttatcactgtttttgg 18215235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 18214961 - 18215055
Alignment:
Q  13 aaaattaaacagattagtggagaaaactcaagttgccatggagcttccaatagatcctttgtgaaagatataaactatccagcactggtgattcc 107  Q
    ||||||||||  |||||||||||  | |||||||| ||||||  ||| || ||||| || |||||||||||||||||||| ||| |||| |||||    
T  18214961 aaaattaaacttattagtggagatgattcaagttgtcatggatattctaaaagatcattggtgaaagatataaactatcctgcaatggttattcc 18215055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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