View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4951-Insertion-4 (Length: 555)

Name: NF4951-Insertion-4
Description: NF4951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4951-Insertion-4
NF4951-Insertion-4
[»] chr7 (5 HSPs)
chr7 (7-465)||(5103679-5104132)
chr7 (7-240)||(5110476-5110709)
chr7 (475-555)||(5103524-5103604)
chr7 (346-457)||(29229675-29229786)
chr7 (407-455)||(34427570-34427618)
[»] chr2 (3 HSPs)
chr2 (349-462)||(30429090-30429202)
chr2 (345-409)||(9733541-9733605)
chr2 (428-469)||(9733551-9733592)
[»] chr5 (2 HSPs)
chr5 (349-455)||(16829208-16829313)
chr5 (356-452)||(35463965-35464061)
[»] chr4 (4 HSPs)
chr4 (350-462)||(7277438-7277550)
chr4 (397-457)||(21861077-21861137)
chr4 (397-457)||(21916940-21917000)
chr4 (356-456)||(10304669-10304769)
[»] chr1 (3 HSPs)
chr1 (345-462)||(8174117-8174234)
chr1 (346-451)||(29853196-29853301)
chr1 (383-462)||(47154689-47154768)
[»] chr6 (1 HSPs)
chr6 (335-413)||(674121-674199)
[»] chr3 (6 HSPs)
chr3 (383-469)||(11534795-11534881)
chr3 (349-415)||(26331223-26331289)
chr3 (345-462)||(26331239-26331355)
chr3 (346-413)||(55121176-55121243)
chr3 (428-469)||(55121188-55121229)
chr3 (351-403)||(25108987-25109039)
[»] chr8 (2 HSPs)
chr8 (428-469)||(24259068-24259109)
chr8 (339-415)||(38779301-38779376)


Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 7 - 465
Target Start/End: Complemental strand, 5104132 - 5103679
Alignment:
Q  7 aaggtggacaagggtgttccaatgaatccttccaatacttagccacatcattaatgttccccccacaacttgtatagagtttgcagcttccatttgggtc 106  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5104132 aaggtggacaacggtgttccaatgaatccttccaatacttagccacatcattaatgttccccccacaacttgtatagagtttgcagcttccatttgggtc 5104033  T
Q  107 tgtagaactttccctaactttttcattggcaggcatggcatgaaattctttgaaaatctttaatgtatcatccattaattccttagcaactccatggttc 206  Q
    | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  5104032 tttagaactttccctaactttttcattggcaagcatggcatgaaattctttgaaaatcttatatgtatcatccattaattccttagcaactccatggttc 5103933  T
Q  207 acaacctaccatcaaattaagaacatatacaacaagattaacctttgcatgatcattctatcaaattatggtcaactcatttatgtatcctcgaccagca 306  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5103932 acaacctaccatcaaattaagaacatatacaacaagattaacgtttgcatgatcattctatcaaattatggtcaactcatttatgtatcctcgaccagca 5103833  T
Q  307 gtcaaatattaatgcctcacgatacacatatatattttctccggtcacgtttataagacaaaaacaattttttatgttcatcgaataaccaatgtatctg 406  Q
    ||||||||||||| |||||||||||||||  |||||| ||||| |||| |||||||||||||||||| |||   |||||||||||||| |||||||||||    
T  5103832 gtcaaatattaatccctcacgatacacat--atatttcctccgatcacatttataagacaaaaacaacttt---tgttcatcgaataatcaatgtatctg 5103738  T
Q  407 gtctatataaaggtcagagaaattagttattgaatgaacctaaaaaattgtgttttctt 465  Q
    ||||||||||| || ||||| ||||||||||||||||||| ||||| || | |||||||    
T  5103737 gtctatataaatgttagagacattagttattgaatgaaccaaaaaagttattttttctt 5103679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 5110709 - 5110476
Alignment:
Q  7 aaggtggacaagggtgttccaatgaatccttccaatacttagccacatcattaatgttccccccacaacttgtatagagtttgcagcttccatttgggtc 106  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||   |   ||||  ||||  |||||||||||||| |||||||||||||| ||    
T  5110709 aaggtggacaagggtgtctcaatgaatccttccaatacttagccacatctgcacaattccttccactgcttgtatagagtttacagcttccatttggatc 5110610  T
Q  107 tgtagaactttccctaactttttcattggcaggcatggcatgaaattctttgaaaatctttaatgtatcatccattaattccttagcaactccatggttc 206  Q
    | | ||||||||  | |  ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||    
T  5110609 ttttgaactttcaattaacttttcattggcaggcatggcatgaaattctttgaaaattcttaatgtatcatccattaattccttagcaactccatgattc 5110510  T
Q  207 acaacctaccatcaaattaagaacatatacaaca 240  Q
    |||||||| ||| | |||||| ||| ||| ||||    
T  5110509 acaacctagcattacattaagcacaaatataaca 5110476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 475 - 555
Target Start/End: Complemental strand, 5103604 - 5103524
Alignment:
Q  475 tccataaatttgccgtctctaacatttaattaacgatggaattagaaactaattttgtttttctctctctattattccgtc 555  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5103604 tccataaatttgccgtctctaacatttaattaacgaaggaattagaaactaattttgtttttctctctctattattccgtc 5103524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 457
Target Start/End: Original strand, 29229675 - 29229786
Alignment:
Q  346 tccggtcacgtttataagacaaaaacaattttttatgttcatcgaataaccaatgtatctggtctatataaaggtcagagaaattagttattgaatgaac 445  Q
    ||||||||| | ||||||  |||||||| ||||||  |||||  || ||| |||| || ||||||||||| |||||||| | |||||||||| |||||||    
T  29229675 tccggtcacatatataagcaaaaaacaactttttagattcattaaacaactaatgcatttggtctatatataggtcagatacattagttattcaatgaac 29229774  T
Q  446 ctaaaaaattgt 457  Q
    ||||||| ||||    
T  29229775 ctaaaaagttgt 29229786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 455
Target Start/End: Original strand, 34427570 - 34427618
Alignment:
Q  407 gtctatataaaggtcagagaaattagttattgaatgaacctaaaaaatt 455  Q
    ||||||||| |||||||| | |||||||||||||||||| |||||||||    
T  34427570 gtctatatataggtcagatatattagttattgaatgaacttaaaaaatt 34427618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 9e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 349 - 462
Target Start/End: Complemental strand, 30429202 - 30429090
Alignment:
Q  349 ggtcacgtttataagacaaaaacaattttttatgttcatcgaataaccaatgtatctggtctatataaaggtcagagaaattagttattgaatgaaccta 448  Q
    |||||| |||||||| |||||| |||| |||| ||| || ||||||| ||||||||| |||||||||||||||||| | |||| ||||||||||||||||    
T  30429202 ggtcacatttataag-caaaaaaaattgtttaggtttattgaataactaatgtatctagtctatataaaggtcagatacattaattattgaatgaaccta 30429104  T
Q  449 aaaaattgtgtttt 462  Q
    |||| |||| ||||    
T  30429103 aaaagttgtttttt 30429090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 409
Target Start/End: Complemental strand, 9733605 - 9733541
Alignment:
Q  345 ctccggtcacgtttataagacaaaaacaattttttatgttcatcgaataaccaatgtatctggtc 409  Q
    |||||||||| |||||||   ||||||||||||||| |||||| ||||||| |||||||| ||||    
T  9733605 ctccggtcacatttataaacaaaaaacaattttttaggttcattgaataactaatgtatccggtc 9733541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 469
Target Start/End: Original strand, 9733551 - 9733592
Alignment:
Q  428 attagttattgaatgaacctaaaaaattgtgttttctttata 469  Q
    |||||||||| ||||||||||||||||||| |||| ||||||    
T  9733551 attagttattcaatgaacctaaaaaattgttttttgtttata 9733592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 349 - 455
Target Start/End: Original strand, 16829208 - 16829313
Alignment:
Q  349 ggtcacgtttataagacaaaaacaattttttatgttcatcgaataaccaatgtatctggtctatataaaggtcagagaaattagttattgaatgaaccta 448  Q
    |||||| |||||||| |||||| || |||||| |||||| ||||| | ||||||||| || ||||||||||||||| | ||||||||||  |||||||||    
T  16829208 ggtcacatttataag-caaaaataactttttaagttcattgaatatctaatgtatctagtttatataaaggtcagatacattagttattcgatgaaccta 16829306  T
Q  449 aaaaatt 455  Q
    |||||||    
T  16829307 aaaaatt 16829313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 452
Target Start/End: Original strand, 35463965 - 35464061
Alignment:
Q  356 tttataagacaaaaacaattttttatgttcatcgaataaccaatgtatctggtctatataaaggtcagagaaattagttattgaatgaacctaaaaa 452  Q
    ||||||||  ||||| ||||||||| |||||| ||||||| |||||||| |||||||||| | || ||| | ||||| || | || |||||||||||    
T  35463965 tttataagcaaaaaataattttttaggttcattgaataactaatgtatccggtctatatatatgttagatacattagctactcaaagaacctaaaaa 35464061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 350 - 462
Target Start/End: Complemental strand, 7277550 - 7277438
Alignment:
Q  350 gtcacgtttataagacaaaaacaattttttatgttcatcgaataaccaatgtatctggtctatataaaggtcagagaaattagttattgaatgaacctaa 449  Q
    ||||| ||||||||  |||||| | |||||| ||| || |||||||  ||||||||| |||||||||| |||||| | |||||||||| |||||||||||    
T  7277550 gtcacatttataagcgaaaaacgactttttaagtttattgaataactcatgtatctgatctatataaaagtcagatacattagttattcaatgaacctaa 7277451  T
Q  450 aaaattgtgtttt 462  Q
    ||| |||| ||||    
T  7277450 aaagttgtttttt 7277438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 457
Target Start/End: Complemental strand, 21861137 - 21861077
Alignment:
Q  397 aatgtatctggtctatataaaggtcagagaaattagttattgaatgaacctaaaaaattgt 457  Q
    ||||||||||||||||||||| |||||| | |||| ||||| |||| | ||||||||||||    
T  21861137 aatgtatctggtctatataaaagtcagatacattaattattcaatgtatctaaaaaattgt 21861077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 457
Target Start/End: Complemental strand, 21917000 - 21916940
Alignment:
Q  397 aatgtatctggtctatataaaggtcagagaaattagttattgaatgaacctaaaaaattgt 457  Q
    ||||||||||||||||||||| |||||| | |||| ||||| |||| | ||||||||||||    
T  21917000 aatgtatctggtctatataaaagtcagatacattaattattcaatgtatctaaaaaattgt 21916940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 356 - 456
Target Start/End: Original strand, 10304669 - 10304769
Alignment:
Q  356 tttataagacaaaaacaattttttatgttcatcgaataaccaatgtatctggtctatataaaggtcagagaaattagttattgaatgaacctaaaaaatt 455  Q
    ||||||||  ||||| || |||| ||||||||  ||||||||||| | | ||||||||||  ||||| | | |||||||||| ||||||  |||||||||    
T  10304669 tttataagcaaaaaataacttttcatgttcattaaataaccaatgaagccggtctatatatcggtcatatacattagttatttaatgaatttaaaaaatt 10304768  T
Q  456 g 456  Q
    |    
T  10304769 g 10304769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 462
Target Start/End: Complemental strand, 8174234 - 8174117
Alignment:
Q  345 ctccggtcacgtttataagacaaaaacaattttttatgttcatcgaataaccaatgtatctggtctatataaaggtcagagaaattagttattgaatgaa 444  Q
    |||||||||| ||||||||  ||| |||| ||||||| ||||| |||| |  |||||||||||||||||||||  || || | | ||| |||| ||||||    
T  8174234 ctccggtcacatttataagcaaaacacaactttttatattcattgaatgattaatgtatctggtctatataaaaatcggatacaatagatattcaatgaa 8174135  T
Q  445 cctaaaaaattgtgtttt 462  Q
    ||||||||||||| ||||    
T  8174134 cctaaaaaattgtttttt 8174117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 346 - 451
Target Start/End: Complemental strand, 29853301 - 29853196
Alignment:
Q  346 tccggtcacgtttataagacaaaaacaattttttatgttcatcgaataaccaatgtatctggtctatataaaggtcagagaaattagttattgaatgaac 445  Q
    ||||||||  ||||||||  ||||  || |||||||||||||  |||||  |||||||  | |||||||| | |||||| | ||||||||||||||||||    
T  29853301 tccggtcatatttataagtaaaaattaactttttatgttcatttaataaataatgtattcgatctatatataagtcagatacattagttattgaatgaac 29853202  T
Q  446 ctaaaa 451  Q
    ||||||    
T  29853201 ctaaaa 29853196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 462
Target Start/End: Original strand, 47154689 - 47154768
Alignment:
Q  383 ttcatcgaataaccaatgtatctggtctatataaaggtcagagaaattagttattgaatgaacctaaaaaattgtgtttt 462  Q
    ||||| ||||||||| ||||||  ||||||||| ||| |||| | |||| ||||| |||||||||||||| |||| ||||    
T  47154689 ttcattgaataaccactgtatccagtctatatataggccagatacattatttattaaatgaacctaaaaagttgtttttt 47154768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 335 - 413
Target Start/End: Complemental strand, 674199 - 674121
Alignment:
Q  335 tatatattttctccggtcacgtttataagacaaaaacaattttttatgttcatcgaataaccaatgtatctggtctata 413  Q
    |||||| ||||||||||||| ||||||||  |||||||||||||||  ||||| ||||||| ||| ||| |||||||||    
T  674199 tatatactttctccggtcacatttataagcaaaaaacaattttttagattcattgaataactaatatatttggtctata 674121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 469
Target Start/End: Original strand, 11534795 - 11534881
Alignment:
Q  383 ttcatcgaataaccaatgtatctggtctatataaaggtcagagaaattagttattgaatgaacctaaaaaattgtgttttctttata 469  Q
    ||||| ||||| | ||||||| ||||||||||| |||||||| | ||||  |||| |||||| |||||||||||| |||| ||||||    
T  11534795 ttcattgaatacctaatgtatatggtctatatataggtcagatacattaaatattcaatgaatctaaaaaattgtattttgtttata 11534881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 415
Target Start/End: Original strand, 26331223 - 26331289
Alignment:
Q  349 ggtcacgtttataagacaaaaacaattttttatgttcatcgaataaccaatgtatctggtctatata 415  Q
    |||||| ||||||||  |||||||||||| || |||||| |||| || |||||||||||||||||||    
T  26331223 ggtcacatttataagcaaaaaacaattttctaggttcattgaatgactaatgtatctggtctatata 26331289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 345 - 462
Target Start/End: Complemental strand, 26331355 - 26331239
Alignment:
Q  345 ctccggtcacgtttataagacaaaaacaattttttatgttcatcgaataaccaatgtatctggtctatataaaggtcagagaaattagttattgaatgaa 444  Q
    |||||||||| ||||||||  |||||||| |||||| |||||| |||  || ||||| | ||||||||||| ||  |||| | |||||| ||| ||||||    
T  26331355 ctccggtcacatttataagcaaaaaacaactttttaggttcattgaaagactaatgttt-tggtctatatatagaccagatacattagtcattcaatgaa 26331257  T
Q  445 cctaaaaaattgtgtttt 462  Q
    |||| |||||||| ||||    
T  26331256 cctagaaaattgtttttt 26331239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 413
Target Start/End: Original strand, 55121176 - 55121243
Alignment:
Q  346 tccggtcacgtttataagacaaaaacaattttttatgttcatcgaataaccaatgtatctggtctata 413  Q
    ||||||||| |||||||   ||||||||||||||| |||||| ||||||| ||||||| |||| ||||    
T  55121176 tccggtcacatttataaacaaaaaacaattttttaggttcattgaataactaatgtatttggtttata 55121243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 469
Target Start/End: Complemental strand, 55121229 - 55121188
Alignment:
Q  428 attagttattgaatgaacctaaaaaattgtgttttctttata 469  Q
    |||||||||| ||||||||||||||||||| |||| ||||||    
T  55121229 attagttattcaatgaacctaaaaaattgttttttgtttata 55121188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 351 - 403
Target Start/End: Complemental strand, 25109039 - 25108987
Alignment:
Q  351 tcacgtttataagacaaaaacaattttttatgttcatcgaataaccaatgtat 403  Q
    |||| ||||||||  ||||| |||||||||||||||| ||||||| |||||||    
T  25109039 tcacatttataagtaaaaaataattttttatgttcattgaataactaatgtat 25108987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 469
Target Start/End: Complemental strand, 24259109 - 24259068
Alignment:
Q  428 attagttattgaatgaacctaaaaaattgtgttttctttata 469  Q
    ||||||||||||||||| |||||||||||| ||||| |||||    
T  24259109 attagttattgaatgaatctaaaaaattgtattttccttata 24259068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 415
Target Start/End: Complemental strand, 38779376 - 38779301
Alignment:
Q  339 tattttctccggtcacgtttataagacaaaaacaattttttatgttcatcgaataaccaatgtatctggtctatata 415  Q
    ||||||||||||| || ||||||||| ||||||||||||||| ||| ||  |||||  ||||||||| || ||||||    
T  38779376 tattttctccggttacatttataaga-aaaaacaattttttaagtttattaaataattaatgtatctagtttatata 38779301  T

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