View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4951-Insertion-5 (Length: 381)

Name: NF4951-Insertion-5
Description: NF4951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4951-Insertion-5
NF4951-Insertion-5
[»] chr8 (13 HSPs)
chr8 (11-381)||(1458372-1458742)
chr8 (11-381)||(2428079-2428449)
chr8 (11-84)||(2434740-2434813)
chr8 (11-81)||(2431358-2431428)
chr8 (316-376)||(22268945-22269005)
chr8 (316-381)||(6530806-6530871)
chr8 (316-376)||(26688869-26688930)
chr8 (326-369)||(32157202-32157245)
chr8 (316-349)||(5438450-5438483)
chr8 (316-349)||(15974933-15974966)
chr8 (316-376)||(18897170-18897231)
chr8 (316-345)||(29695339-29695368)
chr8 (316-349)||(40136974-40137007)
[»] chr3 (10 HSPs)
chr3 (316-376)||(42799759-42799819)
chr3 (316-376)||(15034349-15034409)
chr3 (316-360)||(35623278-35623322)
chr3 (317-381)||(42430334-42430397)
chr3 (317-376)||(18316511-18316570)
chr3 (317-376)||(53863880-53863939)
chr3 (316-376)||(11092181-11092241)
chr3 (325-369)||(18319189-18319233)
chr3 (316-376)||(34844375-34844435)
chr3 (316-376)||(40268493-40268553)
[»] chr4 (11 HSPs)
chr4 (318-376)||(29195099-29195157)
chr4 (316-377)||(37980159-37980220)
chr4 (316-375)||(37455574-37455634)
chr4 (316-381)||(5795420-5795486)
chr4 (316-376)||(21344821-21344881)
chr4 (316-376)||(38206137-38206197)
chr4 (316-376)||(42281245-42281305)
chr4 (316-376)||(56409955-56410015)
chr4 (316-349)||(5998699-5998732)
chr4 (317-349)||(31141356-31141388)
chr4 (325-369)||(39030134-39030178)
[»] chr2 (11 HSPs)
chr2 (316-369)||(13747645-13747698)
chr2 (316-376)||(30359658-30359719)
chr2 (317-381)||(32106565-32106630)
chr2 (316-357)||(43964000-43964041)
chr2 (316-359)||(26176337-26176380)
chr2 (316-362)||(18825359-18825405)
chr2 (316-381)||(41908649-41908715)
chr2 (316-349)||(6099530-6099563)
chr2 (316-369)||(26482104-26482157)
chr2 (257-317)||(1191580-1191637)
chr2 (316-360)||(25384556-25384600)
[»] chr1 (11 HSPs)
chr1 (316-381)||(15581153-15581218)
chr1 (316-372)||(6127998-6128054)
chr1 (316-376)||(37046989-37047049)
chr1 (316-361)||(41470622-41470667)
chr1 (316-360)||(44486169-44486213)
chr1 (316-359)||(19480548-19480591)
chr1 (316-349)||(38939233-38939266)
chr1 (316-376)||(34228878-34228938)
chr1 (316-375)||(36428717-36428777)
chr1 (317-369)||(39012302-39012354)
chr1 (316-376)||(39714790-39714850)
[»] chr6 (4 HSPs)
chr6 (316-376)||(28028534-28028594)
chr6 (316-375)||(6691562-6691621)
chr6 (316-358)||(6384014-6384056)
chr6 (317-380)||(24507548-24507612)
[»] chr5 (7 HSPs)
chr5 (316-360)||(5943893-5943937)
chr5 (316-376)||(16172995-16173055)
chr5 (315-355)||(19145550-19145590)
chr5 (317-381)||(31669037-31669101)
chr5 (316-349)||(15485431-15485464)
chr5 (319-376)||(19373243-19373300)
chr5 (317-349)||(32340349-32340381)
[»] scaffold0012 (1 HSPs)
scaffold0012 (316-359)||(240897-240940)
[»] scaffold0236 (1 HSPs)
scaffold0236 (316-375)||(24851-24911)
[»] chr7 (10 HSPs)
chr7 (316-355)||(22696342-22696381)
chr7 (330-381)||(44146577-44146628)
chr7 (315-362)||(46279032-46279079)
chr7 (316-369)||(3968653-3968707)
chr7 (316-381)||(5579245-5579311)
chr7 (316-378)||(19612651-19612713)
chr7 (317-376)||(5273602-5273662)
chr7 (317-349)||(25956305-25956337)
chr7 (317-376)||(38374611-38374671)
chr7 (316-376)||(48125186-48125246)
[»] scaffold0337 (1 HSPs)
scaffold0337 (317-380)||(1753-1817)
[»] scaffold0065 (1 HSPs)
scaffold0065 (317-380)||(12189-12253)


Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 11 - 381
Target Start/End: Complemental strand, 1458742 - 1458372
Alignment:
Q  11 tggatgtccagattctacaactttagacactcctaatcctgtcaatggctgcaattactcatcagttagtagctgctgttaaagtgacatattgatccag 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1458742 tggatgtccagattctacaactttagacactcctaatcctgtcaatggctgcaattactcatcagttagtagctgccgttaaagtgacatattgatccag 1458643  T
Q  111 tcaacaaactgtaactgtaacttcattattgttacttagtttatggctaacaatttatagttgattcaagatcactttgaatcactctattgcaattcat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1458642 tcaacaaactgtaactgtaacttcattattgttacttagtttatggctaacaatttatagttgattcaagatcactttgaatcactctattgcaattcat 1458543  T
Q  211 ttgtaatctgtttagagaaccctaccatccactcgcgaggggatcatttaaagccagagcaagaagactcggtatggactagcccaacgaaattggtact 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1458542 ttgtaatctgtttagagaaccctaccatccactcgcgaggggatcatttaaagccagagcaagaagactcggtatggactagcccaacgaaattggtact 1458443  T
Q  311 agagggagaccttgagaggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtgagtta 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1458442 agagggagaccttgagaggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtgagtta 1458372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 11 - 381
Target Start/End: Complemental strand, 2428449 - 2428079
Alignment:
Q  11 tggatgtccagattctacaactttagacactcctaatcctgtcaatggctgcaattactcatcagttagtagctgctgttaaagtgacatattgatccag 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2428449 tggatgtccagattctacaactttagacactcctaatcctgtcaatggctgcaattactcatcagttagtagctgccgttaaagtgacatattgatccag 2428350  T
Q  111 tcaacaaactgtaactgtaacttcattattgttacttagtttatggctaacaatttatagttgattcaagatcactttgaatcactctattgcaattcat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2428349 tcaacaaactgtaactgtaacttcattattgttacttagtttatggctaacaatttatagttgattcaagatcactttgaatcactctattgcaattcat 2428250  T
Q  211 ttgtaatctgtttagagaaccctaccatccactcgcgaggggatcatttaaagccagagcaagaagactcggtatggactagcccaacgaaattggtact 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2428249 ttgtaatctgtttagagaaccctaccatccactcgcgaggggatcatttaaagccagagcaagaagactcggtatggactagcccaacgaaattggtact 2428150  T
Q  311 agagggagaccttgagaggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtgagtta 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2428149 agagggagaccttgagaggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtgagtta 2428079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 2434813 - 2434740
Alignment:
Q  11 tggatgtccagattctacaactttagacactcctaatcctgtcaatggctgcaattactcatcagttagtagct 84  Q
    ||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||| |||||||||||||    
T  2434813 tggatgtccagattctacaactttagacactccaaaacctgtcagtggctgcaattactcgtcagttagtagct 2434740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 2431428 - 2431358
Alignment:
Q  11 tggatgtccagattctacaactttagacactcctaatcctgtcaatggctgcaattactcatcagttagta 81  Q
    ||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||| ||||||||||    
T  2431428 tggatgtccagattctacaactttagacactccaaaacctgtcagtggctgcaattactcgtcagttagta 2431358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 316 - 376
Target Start/End: Original strand, 22268945 - 22269005
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtg 376  Q
    |||||||||||| ||||| |||||||||||||||  ||||||||||| |||||| ||||||    
T  22268945 gagaccttgagaagagcacactccaaggtcccaagccaacaccaccaggccaacccaagtg 22269005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 316 - 381
Target Start/End: Complemental strand, 6530871 - 6530806
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtgagtta 381  Q
    ||||| |||||||||||| ||||| |||||||||  ||||||||||| |||||| |||||| ||||    
T  6530871 gagacattgagaggagcacactcctaggtcccaagccaacaccaccaggccaacccaagtgggtta 6530806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 316 - 376
Target Start/End: Complemental strand, 26688930 - 26688869
Alignment:
Q  316 gagaccttgag-aggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtg 376  Q
    ||||||||||| ||||||| |||||||||||||||  ||||||||||| |||||| ||||||    
T  26688930 gagaccttgaggaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtg 26688869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 326 - 369
Target Start/End: Complemental strand, 32157245 - 32157202
Alignment:
Q  326 gaggagcatactccaaggtcccaaatcaacaccaccaagccaac 369  Q
    |||||||||||||||||||||||| |||| ||||||| ||||||    
T  32157245 gaggagcatactccaaggtcccaagtcaataccaccaggccaac 32157202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 349
Target Start/End: Original strand, 5438450 - 5438483
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaa 349  Q
    |||||||||||||||||| |||||||||||||||    
T  5438450 gagaccttgagaggagcacactccaaggtcccaa 5438483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 349
Target Start/End: Complemental strand, 15974966 - 15974933
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaa 349  Q
    ||||||||||||||||||||||||||| ||||||    
T  15974966 gagaccttgagaggagcatactccaagatcccaa 15974933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 376
Target Start/End: Complemental strand, 18897231 - 18897170
Alignment:
Q  316 gagaccttgag-aggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtg 376  Q
    ||||||||||| ||||||| |||| ||||||||||| ||||||||| | |||||| ||||||    
T  18897231 gagaccttgaggaggagcacactctaaggtcccaaaccaacaccactaggccaacccaagtg 18897170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 345
Target Start/End: Original strand, 29695339 - 29695368
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtc 345  Q
    ||||||||||||||||||||||||||||||    
T  29695339 gagaccttgagaggagcatactccaaggtc 29695368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 349
Target Start/End: Original strand, 40136974 - 40137007
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaa 349  Q
    |||||||||||||||||| |||||||||||||||    
T  40136974 gagaccttgagaggagcacactccaaggtcccaa 40137007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 316 - 376
Target Start/End: Original strand, 42799759 - 42799819
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtg 376  Q
    |||||||||||||||||| |||||||||||||||  ||||||||||| |||||| ||||||    
T  42799759 gagaccttgagaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtg 42799819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 376
Target Start/End: Complemental strand, 15034409 - 15034349
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtg 376  Q
    ||||||||||||||| ||  ||||||||||||||  ||||||||||| |||||| ||||||    
T  15034409 gagaccttgagaggatcaccctccaaggtcccaaggcaacaccaccaggccaacccaagtg 15034349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 360
Target Start/End: Original strand, 35623278 - 35623322
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaaatcaacaccac 360  Q
    |||||||||||||||||| |||||||||||||||  |||||||||    
T  35623278 gagaccttgagaggagcacactccaaggtcccaagccaacaccac 35623322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 381
Target Start/End: Complemental strand, 42430397 - 42430334
Alignment:
Q  317 agaccttgagaggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtgagtta 381  Q
    ||||||||||||||||| |||||||| |||||| |||| |||||| ||||||| |||||| ||||    
T  42430397 agaccttgagaggagcacactccaagatcccaagtcaataccacc-agccaacccaagtgggtta 42430334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 376
Target Start/End: Original strand, 18316511 - 18316570
Alignment:
Q  317 agaccttgagaggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtg 376  Q
    ||||||||||||||||| |||||||||||||||  || ||||||||  ||||| ||||||    
T  18316511 agaccttgagaggagcacactccaaggtcccaagccagcaccaccagaccaacccaagtg 18316570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 376
Target Start/End: Original strand, 53863880 - 53863939
Alignment:
Q  317 agaccttgagaggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtg 376  Q
    ||||||||||||||||| |||||||||||||||  ||||| ||||| | |||| ||||||    
T  53863880 agaccttgagaggagcacactccaaggtcccaagccaacatcaccaggacaacccaagtg 53863939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 376
Target Start/End: Original strand, 11092181 - 11092241
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtg 376  Q
    ||||||||||||| |||| ||| |||||||||||  ||||||||| | |||||| ||||||    
T  11092181 gagaccttgagagtagcacactacaaggtcccaagccaacaccactaggccaacccaagtg 11092241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 369
Target Start/End: Original strand, 18319189 - 18319233
Alignment:
Q  325 agaggagcatactccaaggtcccaaatcaacaccaccaagccaac 369  Q
    ||||||||| ||||| |||||||||| ||| ||||||||||||||    
T  18319189 agaggagcacactcccaggtcccaaaccaataccaccaagccaac 18319233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 376
Target Start/End: Complemental strand, 34844435 - 34844375
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtg 376  Q
    |||||||||||||||||| ||||||||||| |||  ||||| ||||| | |||| ||||||    
T  34844435 gagaccttgagaggagcacactccaaggtctcaagccaacaacaccagggcaacccaagtg 34844375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 376
Target Start/End: Complemental strand, 40268553 - 40268493
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtg 376  Q
    |||||||| ||||||||  |||||||||||||||  ||||||||||| || ||| ||||||    
T  40268553 gagaccttaagaggagcccactccaaggtcccaagccaacaccaccaggcaaacccaagtg 40268493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 318 - 376
Target Start/End: Complemental strand, 29195157 - 29195099
Alignment:
Q  318 gaccttgagaggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtg 376  Q
    |||||||||||||||| |||||||||||||||  ||||||||||| |||||| ||||||    
T  29195157 gaccttgagaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtg 29195099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 316 - 377
Target Start/End: Original strand, 37980159 - 37980220
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtga 377  Q
    |||||||||||||||||| |||||||||||||||  ||||| ||||| |||||| |||||||    
T  37980159 gagaccttgagaggagcacactccaaggtcccaagccaacatcaccaggccaacccaagtga 37980220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 316 - 375
Target Start/End: Complemental strand, 37455634 - 37455574
Alignment:
Q  316 gagaccttgagaggagcatactcc-aaggtcccaaatcaacaccaccaagccaacacaagt 375  Q
    |||||||||||||||||||||||| ||||||||||  ||||||||||| |||||| |||||    
T  37455634 gagaccttgagaggagcatactccaaaggtcccaagccaacaccaccaggccaacccaagt 37455574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 316 - 381
Target Start/End: Original strand, 5795420 - 5795486
Alignment:
Q  316 gagaccttgag-aggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtgagtta 381  Q
    ||||||||||| |||||||||||||||||| |||| ||||||||||||  ||||| |||||| ||||    
T  5795420 gagaccttgaggaggagcatactccaaggtgccaagtcaacaccaccagaccaacccaagtgggtta 5795486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 376
Target Start/End: Complemental strand, 21344881 - 21344821
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtg 376  Q
    |||||||||||||||||| |||||||||||||||  ||||| || || |||||| ||||||    
T  21344881 gagaccttgagaggagcacactccaaggtcccaagccaacatcatcaggccaacccaagtg 21344821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 376
Target Start/End: Original strand, 38206137 - 38206197
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtg 376  Q
    |||||||||||||||||| |||||||||||||||  || |||||||| | |||| ||||||    
T  38206137 gagaccttgagaggagcacactccaaggtcccaagccagcaccaccaggtcaacccaagtg 38206197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 376
Target Start/End: Original strand, 42281245 - 42281305
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtg 376  Q
    |||||||||||||||||| ||| |||||||||||  ||||||||||  |||||| ||||||    
T  42281245 gagaccttgagaggagcacactacaaggtcccaagccaacaccacctggccaacccaagtg 42281305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 376
Target Start/End: Complemental strand, 56410015 - 56409955
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtg 376  Q
    |||||||||||||||||| |||||||||||||||  ||||| ||||| |||| | ||||||    
T  56410015 gagaccttgagaggagcacactccaaggtcccaagccaacagcaccaggccagcccaagtg 56409955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 349
Target Start/End: Original strand, 5998699 - 5998732
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaa 349  Q
    |||||||||||||||||| |||||||||||||||    
T  5998699 gagaccttgagaggagcacactccaaggtcccaa 5998732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 349
Target Start/End: Original strand, 31141356 - 31141388
Alignment:
Q  317 agaccttgagaggagcatactccaaggtcccaa 349  Q
    ||||||||||||||||| |||||||||||||||    
T  31141356 agaccttgagaggagcacactccaaggtcccaa 31141388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 369
Target Start/End: Original strand, 39030134 - 39030178
Alignment:
Q  325 agaggagcatactccaaggtcccaaatcaacaccaccaagccaac 369  Q
    ||||||||| |||||||||||||||  ||||||||||| ||||||    
T  39030134 agaggagcacactccaaggtcccaagccaacaccaccaggccaac 39030178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 316 - 369
Target Start/End: Original strand, 13747645 - 13747698
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaaatcaacaccaccaagccaac 369  Q
    ||||||||| ||||||||||||||||||||||||  ||||||||| ||||||||    
T  13747645 gagaccttgggaggagcatactccaaggtcccaagccaacaccactaagccaac 13747698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 316 - 376
Target Start/End: Complemental strand, 30359719 - 30359658
Alignment:
Q  316 gagaccttgag-aggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtg 376  Q
    ||||||||||| ||||||| |||||||||||||||  |||||||||||||||||| ||||||    
T  30359719 gagaccttgaggaggagcacactccaaggtcccaagccaacaccaccaagccaacccaagtg 30359658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 317 - 381
Target Start/End: Complemental strand, 32106630 - 32106565
Alignment:
Q  317 agaccttgagagg-agcatactccaaggtcccaaatcaacaccaccaagccaacacaagtgagtta 381  Q
    ||||||||||||| |||| ||||||||||||||| |||||||||||| |||||| |||||| ||||    
T  32106630 agaccttgagagggagcacactccaaggtcccaagtcaacaccaccaggccaacccaagtgggtta 32106565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 316 - 357
Target Start/End: Original strand, 43964000 - 43964041
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaaatcaacac 357  Q
    |||||||||||||||||| |||||||||||||||| ||||||    
T  43964000 gagaccttgagaggagcacactccaaggtcccaaaccaacac 43964041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 316 - 359
Target Start/End: Original strand, 26176337 - 26176380
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaaatcaacacca 359  Q
    |||||||||||||||||| || |||||||||||| |||||||||    
T  26176337 gagaccttgagaggagcacaccccaaggtcccaagtcaacacca 26176380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 362
Target Start/End: Complemental strand, 18825405 - 18825359
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaaatcaacaccacca 362  Q
    |||||||||||||||||| ||||| |||||||||  |||||||||||    
T  18825405 gagaccttgagaggagcacactcctaggtcccaagccaacaccacca 18825359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 381
Target Start/End: Original strand, 41908649 - 41908715
Alignment:
Q  316 gagaccttgag-aggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtgagtta 381  Q
    ||||||||||| ||||||| ||||||||||| |||| | ||||||||| |||||| |||||| ||||    
T  41908649 gagaccttgaggaggagcacactccaaggtctcaaaccgacaccaccaggccaacccaagtgggtta 41908715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 349
Target Start/End: Original strand, 6099530 - 6099563
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaa 349  Q
    |||||||||||||||||| |||||||||||||||    
T  6099530 gagaccttgagaggagcacactccaaggtcccaa 6099563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 369
Target Start/End: Complemental strand, 26482157 - 26482104
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaaatcaacaccaccaagccaac 369  Q
    |||||||||||||||||| ||||| |||||||||  |||||||| || ||||||    
T  26482157 gagaccttgagaggagcacactcctaggtcccaagccaacaccatcaggccaac 26482104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 317
Target Start/End: Complemental strand, 1191637 - 1191580
Alignment:
Q  257 tttaaagccagagcaagaagactcggtatggact-agcccaacgaaattggtactagaggga 317  Q
    ||||||||||||||||    |||| ||||||||| |||||| ||||||||||||||||||||    
T  1191637 tttaaagccagagcaa----actctgtatggacttagcccaccgaaattggtactagaggga 1191580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 360
Target Start/End: Complemental strand, 25384600 - 25384556
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaaatcaacaccac 360  Q
    |||||| ||||||||||| |||||||||||||||  |||||||||    
T  25384600 gagaccctgagaggagcacactccaaggtcccaagccaacaccac 25384556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 316 - 381
Target Start/End: Original strand, 15581153 - 15581218
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtgagtta 381  Q
    |||||||| ||||||||| |||||||||||||||  ||||||||||| |||||| |||||| ||||    
T  15581153 gagacctttagaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgggtta 15581218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 316 - 372
Target Start/End: Original strand, 6127998 - 6128054
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaaatcaacaccaccaagccaacaca 372  Q
    ||||||||||||||||||  ||||||||||||||| |||||||||||  ||||||||    
T  6127998 gagaccttgagaggagcacgctccaaggtcccaaaccaacaccaccagaccaacaca 6128054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 316 - 376
Target Start/End: Complemental strand, 37047049 - 37046989
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtg 376  Q
    |||||||||||||||||| |||||||||||||||  |||||||||||  ||||| ||||||    
T  37047049 gagaccttgagaggagcacactccaaggtcccaagccaacaccaccagaccaacccaagtg 37046989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 316 - 361
Target Start/End: Original strand, 41470622 - 41470667
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaaatcaacaccacc 361  Q
    |||||||||||||||||||||||||||||| |||  ||||||||||    
T  41470622 gagaccttgagaggagcatactccaaggtctcaagccaacaccacc 41470667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 360
Target Start/End: Original strand, 44486169 - 44486213
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaaatcaacaccac 360  Q
    |||||||||||||||||| |||||||||| ||||| |||||||||    
T  44486169 gagaccttgagaggagcacactccaaggttccaaaccaacaccac 44486213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 316 - 359
Target Start/End: Complemental strand, 19480591 - 19480548
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaaatcaacacca 359  Q
    |||||||||||||||||| |||||||| |||||| |||||||||    
T  19480591 gagaccttgagaggagcacactccaagatcccaagtcaacacca 19480548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 349
Target Start/End: Complemental strand, 38939266 - 38939233
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaa 349  Q
    |||||||||||||||||| |||||||||||||||    
T  38939266 gagaccttgagaggagcacactccaaggtcccaa 38939233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 376
Target Start/End: Complemental strand, 34228938 - 34228878
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtg 376  Q
    ||||||||||||||| || ||||| |||||||||  |||||||||||  ||||| ||||||    
T  34228938 gagaccttgagaggaacacactccgaggtcccaagccaacaccaccagaccaactcaagtg 34228878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 375
Target Start/End: Complemental strand, 36428777 - 36428717
Alignment:
Q  316 gagaccttgag-aggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagt 375  Q
    ||||||||||| |||||||||||||||||| ||||  ||||||||||  |||||| |||||    
T  36428777 gagaccttgaggaggagcatactccaaggtaccaagccaacaccacccggccaacccaagt 36428717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 369
Target Start/End: Complemental strand, 39012354 - 39012302
Alignment:
Q  317 agaccttgagaggagcatactccaaggtcccaaatcaacaccaccaagccaac 369  Q
    ||||||||||| ||||| |||||||||||||||  ||||||||| | ||||||    
T  39012354 agaccttgagaagagcacactccaaggtcccaagccaacaccactaggccaac 39012302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 376
Target Start/End: Original strand, 39714790 - 39714850
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtg 376  Q
    |||||||||||||||||| |||||||| ||||||  |||| |||| | |||||| ||||||    
T  39714790 gagaccttgagaggagcacactccaagatcccaagccaacgccactatgccaacccaagtg 39714850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 316 - 376
Target Start/End: Complemental strand, 28028594 - 28028534
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtg 376  Q
    |||||||||||||||||  |||| |||||||||| |||||||||||| |||||| ||||||    
T  28028594 gagaccttgagaggagctcactcaaaggtcccaagtcaacaccaccaggccaacccaagtg 28028534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 316 - 375
Target Start/End: Original strand, 6691562 - 6691621
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagt 375  Q
    |||||||||||||||||| |||||||||||  || |||||||||||| |||||| |||||    
T  6691562 gagaccttgagaggagcacactccaaggtctaaagtcaacaccaccaggccaacccaagt 6691621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 358
Target Start/End: Original strand, 6384014 - 6384056
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaaatcaacacc 358  Q
    |||||||||||||||||| |||||||||||||||  |||||||    
T  6384014 gagaccttgagaggagcacactccaaggtcccaagccaacacc 6384056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 380
Target Start/End: Original strand, 24507548 - 24507612
Alignment:
Q  317 agaccttgag-aggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtgagtt 380  Q
    |||||||||| ||||||| |||||||||||||||  ||||||||| | |||||| ||| ||||||    
T  24507548 agaccttgaggaggagcaaactccaaggtcccaagccaacaccactaggccaacccaaatgagtt 24507612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 316 - 360
Target Start/End: Original strand, 5943893 - 5943937
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaaatcaacaccac 360  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||    
T  5943893 gagaccttgagaggagcacactccaaggtcccaagtcaacaccac 5943937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 376
Target Start/End: Original strand, 16172995 - 16173055
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtg 376  Q
    |||||||||||||||||| ||||||||||| |||  |||||| |||| |||||| ||||||    
T  16172995 gagaccttgagaggagcacactccaaggtctcaagccaacactaccaggccaacccaagtg 16173055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 355
Target Start/End: Original strand, 19145550 - 19145590
Alignment:
Q  315 ggagaccttgagaggagcatactccaaggtcccaaatcaac 355  Q
    |||||||||||||||||||||||||||| |||||| |||||    
T  19145550 ggagaccttgagaggagcatactccaagatcccaagtcaac 19145590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 381
Target Start/End: Original strand, 31669037 - 31669101
Alignment:
Q  317 agaccttgagaggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtgagtta 381  Q
    ||||||||||||||||| |||||||||||||||  |||||||| ||  ||||| |||||| ||||    
T  31669037 agaccttgagaggagcagactccaaggtcccaagccaacaccatcagaccaacccaagtgggtta 31669101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 349
Target Start/End: Original strand, 15485431 - 15485464
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaa 349  Q
    |||||||||||||||||| |||||||||||||||    
T  15485431 gagaccttgagaggagcacactccaaggtcccaa 15485464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 376
Target Start/End: Complemental strand, 19373300 - 19373243
Alignment:
Q  319 accttgagaggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtg 376  Q
    |||||||||| |||| ||||||||||| |||  ||||||||||| |||||| ||||||    
T  19373300 accttgagagtagcacactccaaggtctcaagccaacaccaccaggccaactcaagtg 19373243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 349
Target Start/End: Original strand, 32340349 - 32340381
Alignment:
Q  317 agaccttgagaggagcatactccaaggtcccaa 349  Q
    ||||||||||||||||| |||||||||||||||    
T  32340349 agaccttgagaggagcacactccaaggtcccaa 32340381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 316 - 359
Target Start/End: Original strand, 240897 - 240940
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaaatcaacacca 359  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||    
T  240897 gagaccttgagaggagcatactccaagatcccaaaccaacacca 240940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 375
Target Start/End: Original strand, 24851 - 24911
Alignment:
Q  316 gagaccttgag-aggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagt 375  Q
    ||||||||||| ||||||| ||||||||| ||||| |||||||||||| |||||| |||||    
T  24851 gagaccttgaggaggagcaaactccaaggccccaagtcaacaccaccaggccaacccaagt 24911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 316 - 355
Target Start/End: Complemental strand, 22696381 - 22696342
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaaatcaac 355  Q
    |||||||||||||||||| |||||||| ||||||||||||    
T  22696381 gagaccttgagaggagcacactccaagatcccaaatcaac 22696342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 330 - 381
Target Start/End: Original strand, 44146577 - 44146628
Alignment:
Q  330 agcatactccaaggtcccaaatcaacaccaccaagccaacacaagtgagtta 381  Q
    |||| |||||||||||||||| ||||||||| | |||||| |||||||||||    
T  44146577 agcacactccaaggtcccaaaccaacaccactaggccaacccaagtgagtta 44146628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 362
Target Start/End: Complemental strand, 46279079 - 46279032
Alignment:
Q  315 ggagaccttgagaggagcatactccaaggtcccaaatcaacaccacca 362  Q
    ||||||||||||||||||| |||||||||||| || ||||| ||||||    
T  46279079 ggagaccttgagaggagcacactccaaggtccaaagtcaactccacca 46279032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 369
Target Start/End: Original strand, 3968653 - 3968707
Alignment:
Q  316 gagaccttgag-aggagcatactccaaggtcccaaatcaacaccaccaagccaac 369  Q
    ||||||||||| ||||||| |||| |||||||||| |||||||||||| ||||||    
T  3968653 gagaccttgaggaggagcacactcgaaggtcccaagtcaacaccaccatgccaac 3968707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 381
Target Start/End: Original strand, 5579245 - 5579311
Alignment:
Q  316 gagaccttgag-aggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtgagtta 381  Q
    ||||||||||| ||||||| |||||||||||||||  ||||||||||| | |||| |||||| ||||    
T  5579245 gagaccttgaggaggagcacactccaaggtcccaagccaacaccaccaggtcaacccaagtgggtta 5579311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 378
Target Start/End: Original strand, 19612651 - 19612713
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtgag 378  Q
    |||||||||||||||||| ||| |||| ||||||  ||||||||| || ||||| ||||||||    
T  19612651 gagaccttgagaggagcacacttcaagatcccaagccaacaccactaaaccaactcaagtgag 19612713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 376
Target Start/End: Original strand, 5273602 - 5273662
Alignment:
Q  317 agaccttgag-aggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtg 376  Q
    |||||||||| ||||||| |||| ||||||||||  ||||||||||| |||||| ||||||    
T  5273602 agaccttgaggaggagcacactctaaggtcccaagccaacaccaccaggccaacccaagtg 5273662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 349
Target Start/End: Original strand, 25956305 - 25956337
Alignment:
Q  317 agaccttgagaggagcatactccaaggtcccaa 349  Q
    ||||||||||||||||| |||||||||||||||    
T  25956305 agaccttgagaggagcacactccaaggtcccaa 25956337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 376
Target Start/End: Original strand, 38374611 - 38374671
Alignment:
Q  317 agaccttgag-aggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtg 376  Q
    |||||||||| ||||||| |||| ||||||||||  ||||||||||| |||||| ||||||    
T  38374611 agaccttgaggaggagcacactctaaggtcccaagccaacaccaccacgccaacccaagtg 38374671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 376
Target Start/End: Original strand, 48125186 - 48125246
Alignment:
Q  316 gagaccttgagaggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtg 376  Q
    ||||||||  |||||||| |||||||||||||||  |||||||||||  ||||| ||||||    
T  48125186 gagaccttcggaggagcacactccaaggtcccaagccaacaccaccagaccaacccaagtg 48125246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 380
Target Start/End: Complemental strand, 1817 - 1753
Alignment:
Q  317 agaccttgag-aggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtgagtt 380  Q
    |||||||||| ||||||| |||||||||||||||  ||||||||| | |||||| ||| ||||||    
T  1817 agaccttgaggaggagcaaactccaaggtcccaagccaacaccactaggccaacccaaatgagtt 1753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 380
Target Start/End: Complemental strand, 12253 - 12189
Alignment:
Q  317 agaccttgag-aggagcatactccaaggtcccaaatcaacaccaccaagccaacacaagtgagtt 380  Q
    |||||||||| ||||||| |||||||||||||||  ||||||||| | |||||| ||| ||||||    
T  12253 agaccttgaggaggagcaaactccaaggtcccaagccaacaccactaggccaacccaaatgagtt 12189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University