View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4951-Insertion-6 (Length: 261)

Name: NF4951-Insertion-6
Description: NF4951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4951-Insertion-6
NF4951-Insertion-6
[»] chr4 (2 HSPs)
chr4 (71-261)||(55331017-55331207)
chr4 (68-170)||(55336449-55336551)
[»] chr2 (10 HSPs)
chr2 (70-171)||(8395391-8395492)
chr2 (70-171)||(8406080-8406181)
chr2 (70-171)||(8439297-8439398)
chr2 (83-145)||(8368479-8368541)
chr2 (83-145)||(8400869-8400931)
chr2 (122-168)||(8404185-8404231)
chr2 (83-145)||(8422446-8422508)
chr2 (70-171)||(8375705-8375806)
chr2 (70-171)||(8412200-8412301)
chr2 (70-171)||(8434298-8434399)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 71 - 261
Target Start/End: Original strand, 55331017 - 55331207
Alignment:
Q  71 ggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcca 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55331017 ggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcca 55331116  T
Q  171 tgaaacacttcacatcttgttctgtttgatttccaagagcaactgtgttttcgatttggcttcgaagatgtttgaataatcttgtagcgtt 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55331117 tgaaacacttcacatcttgttctgtttgatttccaagagcaactgtgttttcgatttggcttcgaagatgtttgaataatcttgtagcgtt 55331207  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 68 - 170
Target Start/End: Original strand, 55336449 - 55336551
Alignment:
Q  68 gcaggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttct 167  Q
    |||||||||||||||| ||||| ||||||||||||||| |||||||||||| | ||||| | |||||||||||||||||||||||||||||| |||||||    
T  55336449 gcaggccaccaaacagaaggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagctttgtcaagtgccaacactttct 55336548  T
Q  168 cca 170  Q
    |||    
T  55336549 cca 55336551  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 171
Target Start/End: Complemental strand, 8395492 - 8395391
Alignment:
Q  70 aggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcc 169  Q
    ||||||||||  |||||| | | ||||||||||  |||||||||||||  | |||||||| ||||||||||| ||||||||||| ||||||||||| |||    
T  8395492 aggccaccaagtagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaactttttcc 8395393  T
Q  170 at 171  Q
    ||    
T  8395392 at 8395391  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 171
Target Start/End: Original strand, 8406080 - 8406181
Alignment:
Q  70 aggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcc 169  Q
    ||||||||||  |||||| | | ||||||||||  |||||||||||||  | |||||||| ||||||||||| ||||||||||| ||||||||||| |||    
T  8406080 aggccaccaagtagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaactttttcc 8406179  T
Q  170 at 171  Q
    ||    
T  8406180 at 8406181  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 171
Target Start/End: Original strand, 8439297 - 8439398
Alignment:
Q  70 aggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcc 169  Q
    ||||||||||  |||||||| | |||||| |||  |||||||||||||  | || ||||||||||| || || ||||| |||||||||||||| || |||    
T  8439297 aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaagtgccaaaaccttttcc 8439396  T
Q  170 at 171  Q
    ||    
T  8439397 at 8439398  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 8368479 - 8368541
Alignment:
Q  83 gcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagct 145  Q
    ||||||| |||||||  ||| |||||||||| |||||| ||||| ||||| ||||||||||||    
T  8368479 gcaggttcatatttttgagggaatttttcaatcataactcctaacaaaggtagtggataagct 8368541  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 145
Target Start/End: Complemental strand, 8400931 - 8400869
Alignment:
Q  83 gcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagct 145  Q
    ||||||| |||||||  ||| |||||||||| |||||| ||||| ||||| ||||||||||||    
T  8400931 gcaggttcatatttttgagggaatttttcaatcataactcctaacaaaggtagtggataagct 8400869  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 8404185 - 8404231
Alignment:
Q  122 cctaataaaggaagtggataagctttgtcaagtgccaaaactttctc 168  Q
    |||||||||||||||||||| ||||| ||||| |||||||| |||||    
T  8404185 cctaataaaggaagtggataggctttatcaagagccaaaaccttctc 8404231  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 145
Target Start/End: Complemental strand, 8422508 - 8422446
Alignment:
Q  83 gcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagct 145  Q
    ||||||| |||||||  ||| |||||||||| |||||| ||||| ||||| ||||||||||||    
T  8422508 gcaggttcatatttttgagggaatttttcaatcataactcctaacaaaggtagtggataagct 8422446  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 171
Target Start/End: Complemental strand, 8375806 - 8375705
Alignment:
Q  70 aggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcc 169  Q
    ||||||||||  |||||||| | |||||| |||  |||||||||||||  | || ||||||||||| || || ||||| |||| ||||||||| || |||    
T  8375806 aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaattgccaaaaccttttcc 8375707  T
Q  170 at 171  Q
    ||    
T  8375706 at 8375705  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 171
Target Start/End: Original strand, 8412200 - 8412301
Alignment:
Q  70 aggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcc 169  Q
    ||||||||||  |||||||| | |||||| |||  |||||||||||||  | || ||||||||||| || || ||||| |||| ||||||||| || |||    
T  8412200 aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaattgccaaaaccttttcc 8412299  T
Q  170 at 171  Q
    ||    
T  8412300 at 8412301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 171
Target Start/End: Original strand, 8434298 - 8434399
Alignment:
Q  70 aggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcc 169  Q
    ||||||||||  |||||||| | |||||| |||  |||||||||||||  | || ||||||||||| || || ||||| |||| ||||||||| || |||    
T  8434298 aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaattgccaaaaccttttcc 8434397  T
Q  170 at 171  Q
    ||    
T  8434398 at 8434399  T

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