View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4951_high_4 (Length: 450)

Name: NF4951_high_4
Description: NF4951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4951_high_4
NF4951_high_4
[»] chr7 (1 HSPs)
chr7 (22-440)||(19806323-19806743)
[»] chr2 (31 HSPs)
chr2 (1-243)||(39135907-39136149)
chr2 (231-442)||(39136173-39136384)
chr2 (1-438)||(39474250-39474708)
chr2 (299-439)||(39458169-39458309)
chr2 (253-440)||(39422460-39422647)
chr2 (253-440)||(39416343-39416530)
chr2 (1-245)||(39416559-39416824)
chr2 (343-440)||(39129487-39129584)
chr2 (91-238)||(39422722-39422869)
chr2 (253-440)||(39488161-39488348)
chr2 (342-423)||(39601994-39602075)
chr2 (338-440)||(39151897-39151999)
chr2 (22-96)||(39488406-39488480)
chr2 (353-439)||(39123536-39123622)
chr2 (337-407)||(44623617-44623687)
chr2 (339-411)||(39214925-39214997)
chr2 (339-415)||(39450499-39450575)
chr2 (299-413)||(27154981-27155095)
chr2 (342-411)||(39382213-39382282)
chr2 (343-420)||(39495534-39495611)
chr2 (339-411)||(39199482-39199554)
chr2 (339-411)||(39399013-39399085)
chr2 (339-410)||(39220162-39220233)
chr2 (352-411)||(39391666-39391725)
chr2 (345-387)||(39479182-39479224)
chr2 (38-96)||(39877634-39877692)
chr2 (339-409)||(44614473-44614543)
chr2 (38-78)||(39457788-39457828)
chr2 (351-411)||(39161102-39161162)
chr2 (351-411)||(39208032-39208092)
chr2 (22-78)||(39422897-39422953)
[»] chr8 (2 HSPs)
chr8 (338-409)||(44951384-44951455)
chr8 (132-168)||(32984770-32984806)
[»] chr5 (1 HSPs)
chr5 (352-411)||(33559636-33559695)
[»] chr6 (1 HSPs)
chr6 (343-381)||(16112428-16112466)


Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 22 - 440
Target Start/End: Original strand, 19806323 - 19806743
Alignment:
Q  22 tgatgaagaatacttaaattttaaatggcttgcatcattcgataaaaatacatcgcaatcggcttctcgtgaagatga---------tgatgatgatgct 112  Q
    |||||||||| |||||||||| ||||||||  ||||||| |||||||||||||||||||| |||||||||||||| ||         |||||||||| ||    
T  19806323 tgatgaagaacacttaaattt-aaatggctcacatcatttgataaaaatacatcgcaatcagcttctcgtgaagaagaagaagaagatgatgatgatact 19806421  T
Q  113 ttatcagcaaggtttcataagaagagggatacaactacactgtcagttaagagggtattcgatgacaacaattctttgtgtggttcgatgaagaaatcca 212  Q
    ||||||  | ||||||||||||||||| |||||||||||||| |||| |||||||||| ||||| ||||||||| |||||||||||||||||||||||||    
T  19806422 ttatcattatggtttcataagaagaggcatacaactacactgccagtcaagagggtatccgatgtcaacaattccttgtgtggttcgatgaagaaatcca 19806521  T
Q  213 aggtgtctccaacaacatatgatgatgatgacgacgacgacatgtcaactgataaatcattttccacactcaaagaaaaacttgtgttggtagaaaaatc 312  Q
    |||||||||||||| |||||||||||| |   | |      |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19806522 aggtgtctccaacaccatatgatgatgttcctgcc------atgtcaactgataaatcattttccacactcaaagaagaacttgtgttggtagaaaaatc 19806615  T
Q  313 atttgaggatatcagaagcaagacacaagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaa 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19806616 atttgaggatatcagaagcaagacacaagtagaagagaggagattgcagtccataaagagagatattgaggattgctgcgaagatcttgaaaataagaaa 19806715  T
Q  413 aaggaaattagggatgttggaagaatta 440  Q
    |||||||||||  ||||||| |||||||    
T  19806716 aaggaaattagttatgttgggagaatta 19806743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 39135907 - 39136149
Alignment:
Q  1 taagccaaagttttgtgttggtgatgaagaatacttaaattttaaatggcttgcatcattcgataaaaatacatcgcaatcggcttctcgtgaagatgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39135907 taagccaaagttttgtgttggtgatgaagaatacttaaattttaaatggcttgcatcattcgataaaaatacatcgcaatcggcttctcgtgaagatgat 39136006  T
Q  101 gatgatgatgctttatcagcaaggtttcataagaagagggatacaactacactgtcagttaagagggtattcgatgacaacaattctttgtgtggttcga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  39136007 gatgatgatgctttatcagcaaggtttcataagaagagggatacaactacactgtcagttaagagggtattcgatgacaacaattccttgtgtggttcga 39136106  T
Q  201 tgaagaaatccaaggtgtctccaacaacatatgatgatgatga 243  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  39136107 tgaagaaatccaaggtgtctccaacaccatatgatgatgatga 39136149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 231 - 442
Target Start/End: Original strand, 39136173 - 39136384
Alignment:
Q  231 atgatgatgatgacgacgacgacatgtcaactgataaatcattttccacactcaaagaaaaacttgtgttggtagaaaaatcatttgaggatatcagaag 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39136173 atgatgatgatgacgacgacgacatgtcaactgataaatcattttccacactcaaagaaaaacttgtgttggtagaaaaatcatttgaggatatcagaag 39136272  T
Q  331 caagacacaagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgtt 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39136273 caagacacaagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgtt 39136372  T
Q  431 ggaagaattatc 442  Q
    ||||||||||||    
T  39136373 ggaagaattatc 39136384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 39474708 - 39474250
Alignment:
Q  1 taagccaaagttttgtgttgg---tgatgaagaatacttaaattttaaatggcttgcatcattcgataaaaatacatcgcaatcggcttctcg------- 90  Q
    ||||||||| |||||||||||   |||||||||| | |||||||||||||||||  ||||||||||||||| ||||| ||| ||  ||| |||           
T  39474708 taagccaaatttttgtgttggagatgatgaagaacatttaaattttaaatggctaacatcattcgataaaagtacattgcattcaccttttcgtcaagac 39474609  T
Q  91 --------tgaagatgatgatgatgatgctttatcagcaaggtttcataagaagagggatacaactacactgtcagttaagagggtattcgatgacaaca 182  Q
            ||||||||||||| ||| | ||||   |||  ||||||  |||||||||| ||| |  |||||| | |||||||||||||| ||| ||||||    
T  39474608 tttgaatctgaagatgatgataatgttcctttgatagcgtggtttccaaagaagaggggtactatcacactgcctgttaagagggtatttgataacaaca 39474509  T
Q  183 attctttgtgtggttcgatgaagaaatccaaggtgtctccaacaacatatgatgatgatgacgacg---acgacatgtcaactgataaatcattttccac 279  Q
     ||| ||||| |||| ||||||||||||||||||||| |||||| |||||||||||||||| || |     | ||||||||| ||||||||||||||| |    
T  39474508 gttccttgtgcggtttgatgaagaaatccaaggtgtccccaacatcatatgatgatgatgatgatgttcctgccatgtcaacggataaatcattttcctc 39474409  T
Q  280 actcaaagaaaaacttgtgttggtagaaaaatcatttgaggatatcagaagcaagacacaagtagaagagaggagattgcagtccataaagagagatatt 379  Q
    ||||||  || ||||||  || |||||||||||||||||||||  |  ||| | ||| ||| ||||| ||  ||||||||| ||||||||||||||||||    
T  39474408 actcaagaaagaacttgcatttgtagaaaaatcatttgaggattgccaaaggacgacgcaaatagaaaaggagagattgcattccataaagagagatatt 39474309  T
Q  380 gaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgttggaagaat 438  Q
    |||||||||| |||||| |||||||||||||||||| |||||||  |||||||||||||    
T  39474308 gaggagtgctccgaagagcttgaaaataagaaaaagaaaattagtcatgttggaagaat 39474250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 299 - 439
Target Start/End: Original strand, 39458169 - 39458309
Alignment:
Q  299 ttggtagaaaaatcatttgaggatatcagaagcaagacacaagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatc 398  Q
    ||||||||||||||||||||||||  || ||| | || |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  39458169 ttggtagaaaaatcatttgaggattgcaaaaggacgagacaagtagaagagaagagattgcagtccataaagagagatattgaggagtgctgcaaagatc 39458268  T
Q  399 ttgaaaataagaaaaaggaaattagggatgttggaagaatt 439  Q
    ||||||| ||||||||||||| ||   ||||||||||||||    
T  39458269 ttgaaaacaagaaaaaggaaactatttatgttggaagaatt 39458309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 253 - 440
Target Start/End: Complemental strand, 39422647 - 39422460
Alignment:
Q  253 catgtcaactgataaatcattttccacactcaaagaaaaacttgtgttggtagaaaaatcatttgaggatatcagaagc-aagacacaagtagaagagag 351  Q
    |||||||| ||||  |||||||||| |||||||| || ||||||  || |||||||||||||||||||| ||  ||||  || | | ||||||||||||     
T  39422647 catgtcaattgatctatcattttcctcactcaaaaaacaacttgcatttgtagaaaaatcatttgagga-atgtgaagggaaaagagaagtagaagagaa 39422549  T
Q  352 gagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgttggaagaatta 440  Q
    || |||||||||||||||||||||||||||| |||||||| |||| || ||||||||||||||||||||||| ||||||||||||||||    
T  39422548 gatattgcagtccataaagagagatattgagaagtgctgcaaagagctggaaaataagaaaaaggaaattagtgatgttggaagaatta 39422460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 253 - 440
Target Start/End: Complemental strand, 39416530 - 39416343
Alignment:
Q  253 catgtcaactgataaatcattttccacactcaaagaaaaacttgtgttggtagaaaaatcatttgaggatatcagaagcaagacacaagtagaagagagg 352  Q
    ||||||||||||||||||| |||||  ||||||| || ||||||  ||  |||||||||||||||||||   ||||||  | |  ||||||||| ||| |    
T  39416530 catgtcaactgataaatcaatttccgaactcaaaaaagaacttgcatttatagaaaaatcatttgaggaacgcagaagggacatgcaagtagaaaagaag 39416431  T
Q  353 agattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgttggaagaatta 440  Q
    |||||||| ||||||||||||||||||||||||||||||  ||| |||||||||||| |||||||||||||  |||||||||||||||    
T  39416430 agattgcattccataaagagagatattgaggagtgctgcagagaacttgaaaataagcaaaaggaaattagttatgttggaagaatta 39416343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 39416824 - 39416559
Alignment:
Q  1 taagccaaagttttgtgttggtgatgaagaata---cttaaattttaaatggcttgcatcattcgataaaaatacatcgcaatcggcttctcgtgaaga- 96  Q
    ||||||||  ||||||||||||||||| ||| |   ||| |||||||||||||||||||||||||||||||| |||||||| || ||||| ||||||||     
T  39416824 taagccaattttttgtgttggtgatgatgaagagcacttcaattttaaatggcttgcatcattcgataaaaaaacatcgcattcagcttcacgtgaagac 39416725  T
Q  97 --------------tgatgatgatgatg---ctttatcagcaaggtttcataagaagagggatacaactacactgtcagttaagagggtattcgatgaca 179  Q
                  ||||||||||||||   |||| ||||||||||||  ||||||||||| | | ||||||||| || ||||||||| ||| ||| |||    
T  39416724 tttgaatctgatgatgatgatgatgatgttcctttgtcagcaaggtttgctaagaagaggggtgctactacactgccaattaagagggcatttgataaca 39416625  T
Q  180 acaattctttgtgtggttcgatgaagaaatccaaggtgtctccaacaacatatgatgatgatgacg 245  Q
    ||||||| || ||| ||| ||||||||||||||||||||| || | | ||||||||||| ||||||    
T  39416624 acaattccttatgttgtttgatgaagaaatccaaggtgtccccgaaaccatatgatgataatgacg 39416559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 343 - 440
Target Start/End: Original strand, 39129487 - 39129584
Alignment:
Q  343 agaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgttggaagaatta 440  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| | |||| |||||||||| ||||||||||||||| |||| |||||||||||    
T  39129487 agaagagaagagattgcagtccataaagagagatattgaggagtgctccaaagagcttgaaaatatgaaaaaggaaattagtgatgctggaagaatta 39129584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 91 - 238
Target Start/End: Complemental strand, 39422869 - 39422722
Alignment:
Q  91 tgaagatgatgatgatgatgctttatcagcaaggtttcataagaagagggatacaactacactgtcagttaagagggtattcgatgacaacaattctttg 190  Q
    ||||||||||||||||| | |||| ||||||||||||| ||||||||||||||| |  |||||| | ||||||| |||||  ||| |||||| ||| |||    
T  39422869 tgaagatgatgatgatgttcctttgtcagcaaggtttcctaagaagagggatactatcacactgcctgttaagaaggtatctgataacaacagttccttg 39422770  T
Q  191 tgtggttcgatgaagaaatccaaggtgtctccaacaacatatgatgat 238  Q
    || |||| ||||||||||||||||||||| || ||| |||||||||||    
T  39422769 tgcggtttgatgaagaaatccaaggtgtccccgacaccatatgatgat 39422722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 253 - 440
Target Start/End: Complemental strand, 39488348 - 39488161
Alignment:
Q  253 catgtcaactgataaatcattttccacactcaaagaaaaacttgtgttggtagaaaaatcatttgaggatatcagaagcaagacacaagtagaagagagg 352  Q
    ||||||| |||| ||||||||||||   || ||| || ||||||  ||||||||||  |||||||||||   || ||| || |  |||||||||||| ||    
T  39488348 catgtcatctgagaaatcattttccttgctgaaaaaagaacttgcattggtagaaacctcatttgaggaatgcaaaaggaaaaggcaagtagaagagggg 39488249  T
Q  353 agattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgttggaagaatta 440  Q
    ||| ||||||| |||||||||||| ||||||||||||   |||| ||||||||||||||||||||||||||   ||||||||||||||    
T  39488248 agactgcagtctataaagagagatgttgaggagtgctctaaagagcttgaaaataagaaaaaggaaattagttgtgttggaagaatta 39488161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 342 - 423
Target Start/End: Original strand, 39601994 - 39602075
Alignment:
Q  342 tagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattag 423  Q
    |||||||||  ||||||||||||||||||| ||||||| |||||||| || |||| ||||||||||||||||||||||||||    
T  39601994 tagaagagaatagattgcagtccataaagatagatattcaggagtgccgcaaagagcttgaaaataagaaaaaggaaattag 39602075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 338 - 440
Target Start/End: Original strand, 39151897 - 39151999
Alignment:
Q  338 caagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgttggaagaa 437  Q
    ||||||||||||| |||| ||||||| ||||||||| ||||||||||  ||| | |||| |||||||||||||||||||||||||    |||||||||||    
T  39151897 caagtagaagagaagagactgcagtcaataaagagaaatattgaggaacgctccaaagagcttgaaaataagaaaaaggaaattacctgtgttggaagaa 39151996  T
Q  438 tta 440  Q
    |||    
T  39151997 tta 39151999  T

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Target: chr2; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 39488480 - 39488406
Alignment:
Q  22 tgatgaagaatacttaaattttaaatggcttgcatcattcgataaaaatacatcgcaatcggcttctcgtgaaga 96  Q
    |||||||||| ||||||||||||||||||| |||||||| |||||||| |||||||| || ||||||||||||||    
T  39488480 tgatgaagaacacttaaattttaaatggctcgcatcatttgataaaaaaacatcgcattcagcttctcgtgaaga 39488406  T

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Target: chr2; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 353 - 439
Target Start/End: Original strand, 39123536 - 39123622
Alignment:
Q  353 agattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgttggaagaatt 439  Q
    |||||||| |||||| ||||||||||||||| ||||| | ||||||||||||||| |||||||||||| ||  |||||| |||||||    
T  39123536 agattgcactccatacagagagatattgaggggtgctccaaagatcttgaaaatatgaaaaaggaaatgagttatgttgaaagaatt 39123622  T

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Target: chr2; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 337 - 407
Target Start/End: Original strand, 44623617 - 44623687
Alignment:
Q  337 acaagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaata 407  Q
    |||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||||||| || |||||||    
T  44623617 acaagtagaagagaggcgattgcggtctataaagagagatattgagaagtgctgcgaagagctagaaaata 44623687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 339 - 411
Target Start/End: Original strand, 39214925 - 39214997
Alignment:
Q  339 aagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaa 411  Q
    ||||||| |||| |||||||||||||||||||||| || |||||||||||||  |||| ||||||||||||||    
T  39214925 aagtagaggagaagagattgcagtccataaagagatatgttgaggagtgctgtaaagagcttgaaaataagaa 39214997  T

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Target: chr2; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 339 - 415
Target Start/End: Original strand, 39450499 - 39450575
Alignment:
Q  339 aagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaag 415  Q
    |||||||||| | ||||||||||||||| |||| |||||||||||| |||||| |||| ||| ||||||||||||||    
T  39450499 aagtagaagaaaagagattgcagtccatcaagacagatattgaggactgctgcaaagagcttcaaaataagaaaaag 39450575  T

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Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 299 - 413
Target Start/End: Complemental strand, 27155095 - 27154981
Alignment:
Q  299 ttggtagaaaaatcatttgaggatatcagaagcaagacacaagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatc 398  Q
    ||||||||||||| |||||| ||  ||| ||  || | ||||| |||||||   ||||||||||||||||||||||||||||||||||||| | |||| |    
T  27155095 ttggtagaaaaattatttgaagaattcaaaaagaaaagacaagaagaagaggaaagattgcagtccataaagagagatattgaggagtgctccaaagagc 27154996  T
Q  399 ttgaaaataagaaaa 413  Q
    ||| ||||| |||||    
T  27154995 ttggaaatatgaaaa 27154981  T

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Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 342 - 411
Target Start/End: Complemental strand, 39382282 - 39382213
Alignment:
Q  342 tagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaa 411  Q
    ||||||||| |||||| ||||||||||||||||||| ||| ||||||||| |||| ||| ||||||||||    
T  39382282 tagaagagaagagattacagtccataaagagagatactgaagagtgctgcaaagagcttcaaaataagaa 39382213  T

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Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 420
Target Start/End: Complemental strand, 39495611 - 39495534
Alignment:
Q  343 agaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaat 420  Q
    |||||||  |||||||||||||||||||||||||||||||||| ||| | |||| |||| |||||  |||||||||||    
T  39495611 agaagaggagagattgcagtccataaagagagatattgaggagcgctccaaagagcttggaaatataaaaaaggaaat 39495534  T

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Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 339 - 411
Target Start/End: Complemental strand, 39199554 - 39199482
Alignment:
Q  339 aagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaa 411  Q
    |||| |||||||  ||||||||||||||||||||||||| ||| ||||||||| |||| ||| ||||||||||    
T  39199554 aagttgaagagaaaagattgcagtccataaagagagatactgaagagtgctgcaaagagcttcaaaataagaa 39199482  T

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Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 339 - 411
Target Start/End: Complemental strand, 39399085 - 39399013
Alignment:
Q  339 aagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaa 411  Q
    |||||||||||| |||||||||||||||||||||||||||||| || |||||  |||| |||| ||| |||||    
T  39399085 aagtagaagagaagagattgcagtccataaagagagatattgaagactgctggaaagaacttggaaaaaagaa 39399013  T

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Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 410
Target Start/End: Original strand, 39220162 - 39220233
Alignment:
Q  339 aagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataaga 410  Q
    |||| |||||||| ||||| ||||||||||||||||| | ||| ||||||||| |||||||| ||| |||||    
T  39220162 aagttgaagagagaagattacagtccataaagagagaaactgaagagtgctgcaaagatcttcaaattaaga 39220233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 352 - 411
Target Start/End: Complemental strand, 39391725 - 39391666
Alignment:
Q  352 gagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaa 411  Q
    |||||||| ||||||||||| ||||||||| ||||||||| |||| |||||| |||||||    
T  39391725 gagattgctgtccataaagaaagatattgaagagtgctgcaaagagcttgaagataagaa 39391666  T

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Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 387
Target Start/End: Complemental strand, 39479224 - 39479182
Alignment:
Q  345 aagagaggagattgcagtccataaagagagatattgaggagtg 387  Q
    |||||| |||||||||||||||||||||||||||||| |||||    
T  39479224 aagagaagagattgcagtccataaagagagatattgaagagtg 39479182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 39877692 - 39877634
Alignment:
Q  38 aattttaaatggcttgcatcattcgataaaaatacatcgcaatcggcttctcgtgaaga 96  Q
    ||||||||||||||  |||||||||||||||| |||||||| || | ||||||||||||    
T  39877692 aattttaaatggctcacatcattcgataaaaaaacatcgcattcagattctcgtgaaga 39877634  T

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Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 409
Target Start/End: Original strand, 44614473 - 44614543
Alignment:
Q  339 aagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataag 409  Q
    ||||||||||||||  ||||| ||| |||||||||||||||||| | |||||| |||| || |||||||||    
T  44614473 aagtagaagagaggcaattgcggtctataaagagagatattgagaaatgctgcaaagagctagaaaataag 44614543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 39457788 - 39457828
Alignment:
Q  38 aattttaaatggcttgcatcattcgataaaaatacatcgca 78  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  39457788 aattttaaatggcttgcatcatttgataaaaaaacatcgca 39457828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 411
Target Start/End: Original strand, 39161102 - 39161162
Alignment:
Q  351 ggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaa 411  Q
    ||||||||||||||||  ||| ||||||||| || |||||| |||| |||||| |||||||    
T  39161102 ggagattgcagtccatccagaaagatattgaagaatgctgcaaagagcttgaagataagaa 39161162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 411
Target Start/End: Complemental strand, 39208092 - 39208032
Alignment:
Q  351 ggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaa 411  Q
    ||||||||||||||||  ||| ||||||||| || |||||| |||| |||||| |||||||    
T  39208092 ggagattgcagtccatccagaaagatattgaagaatgctgcaaagagcttgaagataagaa 39208032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 39422953 - 39422897
Alignment:
Q  22 tgatgaagaatacttaaattttaaatggcttgcatcattcgataaaaatacatcgca 78  Q
    |||||||| | |||| |||||||||||||   |||||||||||||||| ||||||||    
T  39422953 tgatgaaggacacttcaattttaaatggcacacatcattcgataaaaaaacatcgca 39422897  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 409
Target Start/End: Complemental strand, 44951455 - 44951384
Alignment:
Q  338 caagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataag 409  Q
    |||||||||||||||  ||||| | | ||||||||||||||| || ||||||||||||| ||||||||||||    
T  44951455 caagtagaagagaggcaattgcggccgataaagagagatattaagaagtgctgcgaagagcttgaaaataag 44951384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 32984770 - 32984806
Alignment:
Q  132 agaagagggatacaactacactgtcagttaagagggt 168  Q
    ||||||||||||| |||||||||||||||||||||||    
T  32984770 agaagagggatactactacactgtcagttaagagggt 32984806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 411
Target Start/End: Original strand, 33559636 - 33559695
Alignment:
Q  352 gagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaa 411  Q
    ||||||||||||  |||||| ||||||||| ||||||||| |||| |||||| |||||||    
T  33559636 gagattgcagtctgtaaagaaagatattgaagagtgctgcaaagagcttgaagataagaa 33559695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 381
Target Start/End: Original strand, 16112428 - 16112466
Alignment:
Q  343 agaagagaggagattgcagtccataaagagagatattga 381  Q
    |||||||| || |||||||||||||||||||||||||||    
T  16112428 agaagagaagaaattgcagtccataaagagagatattga 16112466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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