View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4951_high_5 (Length: 433)
Name: NF4951_high_5
Description: NF4951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4951_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 17 - 423
Target Start/End: Original strand, 16309661 - 16310061
Alignment:
| Q |
17 |
agtaataatatgtgtcggacaatttttcgatcagaagtgttgatagtacaaaccttaaaatcaagtcgaatggcagtgagcagtggctggcttgcagacc |
116 |
Q |
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| T |
16309661 |
agtaataatatgtgtcggacaatttttcgatcagaagtgttgatagtacaaaccttaaaatcaagtcgaatggcagtgagcagtggctggcttgcagacc |
16309760 |
T |
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| Q |
117 |
aagatggaaaaacaatcactttttgcttctcttgcaccaaacaannnnnnnatcgacgtttgaacacatgcatgtgtaaaataatactccctcgtgtata |
216 |
Q |
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| T |
16309761 |
aagatggaaaaacaatcactttttgcttctcttgcaccaaacaatttttttatcgacgtttgaacacatgcatgtgtaaaataatactccctcgtgtata |
16309860 |
T |
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| Q |
217 |
tgtgttttgatatgagtatgagtattgacgtggcaatatattaccggatacatgtataaaaaataattgtattaattaattaaatatgcgtcacaatata |
316 |
Q |
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| T |
16309861 |
tgtgttttga------tatgagtattgacgtggcaatatattaccggatacatgtataaaaaataattgtattaattaattaaatatgcgtcacaatata |
16309954 |
T |
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| Q |
317 |
catacatttggaatgatattgaggtcattagaaaagttttagaagagtccccgtgagcatattggtagagacatgcattgttatttgcaggattcgggtt |
416 |
Q |
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| T |
16309955 |
catacatttggaatgatattgaggtcattagaaaagttttagaagagtccccgtgagcatattggtagagacatgcattgttatttgcaggatttggatt |
16310054 |
T |
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| Q |
417 |
tgaacct |
423 |
Q |
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| T |
16310055 |
tgaacct |
16310061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 407
Target Start/End: Original strand, 10602005 - 10602049
Alignment:
| Q |
363 |
gtccccgtgagcatattggtagagacatgcattgttatttgcagg |
407 |
Q |
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||||| |||||||| |||| |||||||||||||||||| |||||| |
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| T |
10602005 |
gtccctgtgagcatgttggcagagacatgcattgttatatgcagg |
10602049 |
T |
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