View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4951_high_6 (Length: 355)
Name: NF4951_high_6
Description: NF4951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4951_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 13829333 - 13829512
Alignment:
| Q |
1 |
cagttatcacaaaatcaaatctttcttatttaaaatccaaatttcaataatggcataaaaataatacacgcttaaatatatactttcttctaatactaca |
100 |
Q |
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| T |
13829333 |
cagtaatcacaaaatcaaaactttcttatttaaaatccaaatttcaataatggcataaaaataatacacgcttaaatatatactttcttctaatactaca |
13829432 |
T |
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| Q |
101 |
atttacgtgctaggatgcgaaatctacgtaagtctcttttggaaattaggcaaaatatacgtaagaatatattcagctgc |
180 |
Q |
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| T |
13829433 |
atttacgtgctaggatgcgaaatctacgtaagtctcttttggaaattaggcaaaatatacgtaagaatatattcagctgc |
13829512 |
T |
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Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 208 - 336
Target Start/End: Original strand, 13829534 - 13829668
Alignment:
| Q |
208 |
gcaacaaacttgtttttcattgtactctttctctctataccactcacacaaac------ctaaacctaaaccttctttccgatcgattaacaatgactaa |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||| |
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| T |
13829534 |
gcaacaaacttgtttttcattgtactctttctctctataccactcacacaaacctaaacctaaacctaaaccttctttcaggtcgattaacaatgactaa |
13829633 |
T |
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| Q |
302 |
gggagactgtgatcaaaacccatcacactcctcct |
336 |
Q |
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| T |
13829634 |
gggagactgtgataaaaacccatcacactcctcct |
13829668 |
T |
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