View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4951_low_10 (Length: 217)
Name: NF4951_low_10
Description: NF4951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4951_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 5 - 202
Target Start/End: Original strand, 1458912 - 1459112
Alignment:
| Q |
5 |
gcgtagttttctgccattttgttgtgactc---agacatatgttgtgtttttgtttgagtacaggtatgccgggaatgactgcgtatgctggtttctttg |
101 |
Q |
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||||||||||||||||||| ||||||||| | | ||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||| |
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| T |
1458912 |
gcgtagttttctgccatttcattgtgactcgtgacatatatgttgtgtttttgtttgactacaggtatgcctggaatgactgcttatgctggtttctttg |
1459011 |
T |
|
| Q |
102 |
aagtaggctctcctaagaaaggagagacaatttttgtttcatctgcatctggtgcagttggtcagcttgttggccaatttgccaaattgcatggttgcta |
201 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||| |||||||||||||| || ||||||||||||||||| |
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| T |
1459012 |
aagtaggctctcctaagaaaggagagaatgtttttgtttcagctgcctctggtgcagttggtcaacttgttggccaattcgctaaattgcatggttgcta |
1459111 |
T |
|
| Q |
202 |
t |
202 |
Q |
| |
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| |
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|
| T |
1459112 |
t |
1459112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 5 - 202
Target Start/End: Original strand, 2428619 - 2428819
Alignment:
| Q |
5 |
gcgtagttttctgccattttgttgtgactc---agacatatgttgtgtttttgtttgagtacaggtatgccgggaatgactgcgtatgctggtttctttg |
101 |
Q |
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||||||||||||||||||| ||||||||| | | ||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||| |
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| T |
2428619 |
gcgtagttttctgccatttcattgtgactcgtgacatatatgttgtgtttttgtttgactacaggtatgcctggaatgactgcttatgctggtttctttg |
2428718 |
T |
|
| Q |
102 |
aagtaggctctcctaagaaaggagagacaatttttgtttcatctgcatctggtgcagttggtcagcttgttggccaatttgccaaattgcatggttgcta |
201 |
Q |
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| T |
2428719 |
aagtaggctctcctaagaaaggagagaatgtttttgtttcagctgcctctggtgcagttggtcaacttgttggccaattcgctaaattgcatggttgcta |
2428818 |
T |
|
| Q |
202 |
t |
202 |
Q |
| |
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| |
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| T |
2428819 |
t |
2428819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 39 - 202
Target Start/End: Complemental strand, 2517494 - 2517331
Alignment:
| Q |
39 |
atatgttgtgtttttgtttgagtacaggtatgccgggaatgactgcgtatgctggtttctttgaagtaggctctcctaagaaaggagagacaatttttgt |
138 |
Q |
| |
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|||| ||||||||||||||||| ||||||||||| |||||||| || ||||||||||||||||||||||||||||| || |||||||||| ||||||| |
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| T |
2517494 |
atattttgtgtttttgtttgagcacaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggctctccgaaaaaaggagagaatgtttttgt |
2517395 |
T |
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| Q |
139 |
ttcatctgcatctggtgcagttggtcagcttgttggccaatttgccaaattgcatggttgctat |
202 |
Q |
| |
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|||| |||| ||||||||||||||||| |||||||| |||||||| |||||||||||||||||| |
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| T |
2517394 |
ttcagctgcttctggtgcagttggtcaacttgttggacaatttgctaaattgcatggttgctat |
2517331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 45 - 201
Target Start/End: Complemental strand, 2506515 - 2506359
Alignment:
| Q |
45 |
tgtgtttttgtttgagtacaggtatgccgggaatgactgcgtatgctggtttctttgaagtaggctctcctaagaaaggagagacaatttttgtttcatc |
144 |
Q |
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||||||||| ||||||| |||||||||| ||||||||||| |||||||||||||||||||||||| || | ||||||||||||| ||||||||||| | |
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| T |
2506515 |
tgtgtttttctttgagtgcaggtatgccaggaatgactgcttatgctggtttctttgaagtaggcgctaccaagaaaggagagaatgtttttgtttcagc |
2506416 |
T |
|
| Q |
145 |
tgcatctggtgcagttggtcagcttgttggccaatttgccaaattgcatggttgcta |
201 |
Q |
| |
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||| ||||||||||||||||| |||||||||||||| || ||||||||||||||||| |
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| T |
2506415 |
tgcctctggtgcagttggtcaacttgttggccaattcgctaaattgcatggttgcta |
2506359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 62 - 202
Target Start/End: Complemental strand, 2513111 - 2512971
Alignment:
| Q |
62 |
acaggtatgccgggaatgactgcgtatgctggtttctttgaagtaggctctcctaagaaaggagagacaatttttgtttcatctgcatctggtgcagttg |
161 |
Q |
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||||||||||| ||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||| ||||| ||||||| |
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| T |
2513111 |
acaggtatgccaggaatgactgcttattctggtttctttgaagtaggctctcccaagaaaggagagaatgtttttgtttcagctgcctctggagcagttg |
2513012 |
T |
|
| Q |
162 |
gtcagcttgttggccaatttgccaaattgcatggttgctat |
202 |
Q |
| |
|
|||| |||||||||||||| || |||||||||||||||||| |
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| T |
2513011 |
gtcaacttgttggccaattcgctaaattgcatggttgctat |
2512971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 50 - 198
Target Start/End: Original strand, 2435034 - 2435182
Alignment:
| Q |
50 |
ttttgtttgagtacaggtatgccgggaatgactgcgtatgctggtttctttgaagtaggctctcctaagaaaggagagacaatttttgtttcatctgcat |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||| ||| ||||||| |||||| |
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| T |
2435034 |
ttttgtttgagtacaggtatgccgggaatgactgcatatgctggtttctttgaattaggcagtcctaagaaaggagagaatgtttatgtttcagctgcat |
2435133 |
T |
|
| Q |
150 |
ctggtgcagttggtcagcttgttggccaatttgccaaattgcatggttg |
198 |
Q |
| |
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| ||||| |||||||| ||||| || |||||||| ||| |||||||||| |
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| T |
2435134 |
ccggtgctgttggtcaacttgtaggtcaatttgcaaaactgcatggttg |
2435182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 50 - 198
Target Start/End: Original strand, 2431644 - 2431792
Alignment:
| Q |
50 |
ttttgtttgagtacaggtatgccgggaatgactgcgtatgctggtttctttgaagtaggctctcctaagaaaggagagacaatttttgtttcatctgcat |
149 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||| |||| ||||||||||||| ||||| ||||||||||||||| | ||| ||||||| | |||| |
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| T |
2431644 |
ttttgtttgagtacaggtatgctgggattgactgcatatgttggtttctttgaattaggcagtcctaagaaaggagaaaatgtttatgtttcagcggcat |
2431743 |
T |
|
| Q |
150 |
ctggtgcagttggtcagcttgttggccaatttgccaaattgcatggttg |
198 |
Q |
| |
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| |||| |||||||| ||||||||||||||||| |||||||||||||| |
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| T |
2431744 |
ccagtgctgttggtcaacttgttggccaatttgcaaaattgcatggttg |
2431792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 62 - 180
Target Start/End: Complemental strand, 2497771 - 2497653
Alignment:
| Q |
62 |
acaggtatgccgggaatgactgcgtatgctggtttctttgaagtaggctctcctaagaaaggagagacaatttttgtttcatctgcatctggtgcagttg |
161 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||||||||||||| ||||| |||||||||||||||||| ||||||||||| |||| ||||||||||| | |
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| T |
2497771 |
acaggtatgccaggaataactgcttatgctggtttctttgaactaggcagtcctaagaaaggagagactgtttttgtttcagctgcctctggtgcagtcg |
2497672 |
T |
|
| Q |
162 |
gtcagcttgttggccaatt |
180 |
Q |
| |
|
|||| |||||||| ||||| |
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|
| T |
2497671 |
gtcaacttgttggtcaatt |
2497653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 946207 - 946137
Alignment:
| Q |
132 |
tttttgtttcatctgcatctggtgcagttggtcagcttgttggccaatttgccaaattgcatggttgctat |
202 |
Q |
| |
|
||||||||||| | ||||| ||||| || ||||| |||||||| ||| |||| |||||||||||||||||| |
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| T |
946207 |
tttttgtttcagcagcatcaggtgctgtgggtcaacttgttggtcaacttgctaaattgcatggttgctat |
946137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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