View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4951_low_2 (Length: 479)

Name: NF4951_low_2
Description: NF4951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4951_low_2
NF4951_low_2
[»] chr7 (6 HSPs)
chr7 (9-322)||(5104806-5105117)
chr7 (217-314)||(2344793-2344889)
chr7 (402-462)||(5104127-5104187)
chr7 (404-462)||(5110704-5110762)
chr7 (273-314)||(48021496-48021537)
chr7 (225-309)||(24161820-24161904)
[»] chr6 (3 HSPs)
chr6 (181-309)||(32243293-32243425)
chr6 (235-309)||(10101330-10101404)
chr6 (217-302)||(229053-229138)
[»] chr8 (4 HSPs)
chr8 (226-309)||(27116736-27116819)
chr8 (225-312)||(16736441-16736528)
chr8 (225-309)||(11587770-11587854)
chr8 (181-309)||(37505093-37505225)
[»] chr3 (4 HSPs)
chr3 (180-270)||(1501181-1501275)
chr3 (225-308)||(4540595-4540678)
chr3 (217-309)||(48583895-48583987)
chr3 (181-309)||(32100093-32100225)
[»] chr4 (3 HSPs)
chr4 (236-309)||(22233371-22233444)
chr4 (181-309)||(50174498-50174630)
chr4 (225-309)||(37788061-37788145)
[»] chr1 (6 HSPs)
chr1 (225-297)||(48070319-48070391)
chr1 (225-286)||(1804599-1804660)
chr1 (181-309)||(9410892-9411024)
chr1 (230-286)||(26755800-26755857)
chr1 (226-286)||(51596624-51596684)
chr1 (225-306)||(44441220-44441301)
[»] chr2 (4 HSPs)
chr2 (241-295)||(37742843-37742897)
chr2 (225-308)||(42141781-42141864)
chr2 (225-265)||(38766331-38766371)
chr2 (225-309)||(39958172-39958256)
[»] chr5 (2 HSPs)
chr5 (226-314)||(7196799-7196887)
chr5 (225-289)||(9976519-9976583)


Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 322
Target Start/End: Complemental strand, 5105117 - 5104806
Alignment:
Q  9 gataatactcattttgtcttaaataatactcattatatcttaaattataagtcgttttagagnnnnnnnncttatttcagattataagttgtttcacaat 108  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||        ||| ||| | ||||||||||||||||||||    
T  5105117 gataatactcattttgtcttaaataatacccattatatcttaaattataagtcgttttagagaaaaaaaacttgttttaaattataagttgtttcacaat 5105018  T
Q  109 atcaataaagcattaaatactatttttcttaatataacttcaatttacaactatttcttacnnnnnnnnnnaaattctttaatttatctttcttatatca 208  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||          || ||||||||||||||||||||||||||    
T  5105017 atcaatgaagcattaaatactatttttcttaatataacttcaatttacaactatttcttactttttttttcaa-ttctttaatttatctttcttatatca 5104919  T
Q  209 ttaagatgattttgtaaaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataattt 308  Q
    ||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5104918 ttaagataattttgtaaaa-tgacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcgtataattt 5104820  T
Q  309 gagatgttgagagt 322  Q
    ||||||||||||||    
T  5104819 gagatgttgagagt 5104806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 217 - 314
Target Start/End: Complemental strand, 2344889 - 2344793
Alignment:
Q  217 attttgtaaaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataatttgagatg 314  Q
    ||||||||||| || |||||||||| ||||| ||||||||||||| ||| | ||  |||||||||| ||| |||||||||||||||||||||||||||    
T  2344889 attttgtaaaacta-cttataatttctctttttcatacaacattatttacacttcttaatttgtgtaaaatgatcaaaacatcatataatttgagatg 2344793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 402 - 462
Target Start/End: Complemental strand, 5104187 - 5104127
Alignment:
Q  402 agaatttaccggtatccctctggtttctcaggccaatactcaatgaattctcctgaaggtg 462  Q
    ||||||||||||||||| |||||||||||||||||||||  | ||||||||||||||||||    
T  5104187 agaatttaccggtatccatctggtttctcaggccaataccaagtgaattctcctgaaggtg 5104127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 404 - 462
Target Start/End: Complemental strand, 5110762 - 5110704
Alignment:
Q  404 aatttaccggtatccctctggtttctcaggccaatactcaatgaattctcctgaaggtg 462  Q
    |||||||||||||||||||||||||||||||||||| ||| | |||||||| |||||||    
T  5110762 aatttaccggtatccctctggtttctcaggccaatattcagtaaattctccagaaggtg 5110704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 314
Target Start/End: Complemental strand, 48021537 - 48021496
Alignment:
Q  273 taatttgtgtgaaaagatcaaaacatcatataatttgagatg 314  Q
    |||||||||||||| |||||||| |||||||||||| |||||    
T  48021537 taatttgtgtgaaatgatcaaaatatcatataatttaagatg 48021496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 309
Target Start/End: Original strand, 24161820 - 24161904
Alignment:
Q  225 aaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataatttg 309  Q
    |||| |||| ||||||| |||| |||| |||| |||| ||||||||  ||||  |||||||| || |||||||||||| ||||||    
T  24161820 aaaacaactcataatttctcttcctcacacaatattaattatatttcttaatacgtgtgaaatgaccaaaacatcatacaatttg 24161904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 309
Target Start/End: Original strand, 32243293 - 32243425
Alignment:
Q  181 aattctttaatttatctttcttatatcattaa-----gatgattttgtaaaaataacttataatttatctttctcatacaacattagttatattttctaa 275  Q
    |||||||||||||||||||| | || ||||||     ||| ||||||||||| ||  ||||||||| ||||| ||||||||||||| ||| ||||| |||    
T  32243293 aattctttaatttatctttcatgtaccattaatgaaggataattttgtaaaattat-ttataatttctctttttcatacaacattaattacattttttaa 32243391  T
Q  276 tttgtgtgaaaagatcaaaacatcatataatttg 309  Q
    ||||||| ||| ||  ||||| ||||||||||||    
T  32243392 tttgtgtaaaatgactaaaacgtcatataatttg 32243425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 309
Target Start/End: Complemental strand, 10101404 - 10101330
Alignment:
Q  235 ataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataatttg 309  Q
    ||||||| |||||||||||||| ||||||||||  |  |||||||||| ||| |||||| || ||||||||||||    
T  10101404 ataatttctctttctcatacaatattagttatacatcttaatttgtgtaaaatgatcaatacgtcatataatttg 10101330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 302
Target Start/End: Complemental strand, 229138 - 229053
Alignment:
Q  217 attttgtaaaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcata 302  Q
    ||||| || |||| |||| |||||| ||||| |||||| |||||| ||| | ||  |||||||| ||||| |||||||||||||||    
T  229138 attttttataaatgacttgtaatttctctttttcatacgacattaattacagttcttaatttgtatgaaatgatcaaaacatcata 229053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 309
Target Start/End: Original strand, 27116736 - 27116819
Alignment:
Q  226 aaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataatttg 309  Q
    |||| |||||||||||||||||  |||||||||||| ||| ||||  |||||||||||||| |||| ||| |||||||| ||||    
T  27116736 aaattacttataatttatcttttccatacaacattaattacatttcttaatttgtgtgaaatgatcgaaatatcatatagtttg 27116819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 312
Target Start/End: Complemental strand, 16736528 - 16736441
Alignment:
Q  225 aaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataatttgaga 312  Q
    |||| |||||||||||| |||| | || |||| |||| ||| ||||| ||||  |||||||| ||||||||||||||| |||||||||    
T  16736528 aaaacaacttataatttctcttccccacacaatattaattacattttttaatacgtgtgaaatgatcaaaacatcatacaatttgaga 16736441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 309
Target Start/End: Complemental strand, 11587854 - 11587770
Alignment:
Q  225 aaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataatttg 309  Q
    |||| |||| ||||| | |||||| ||||||| |||| ||||||||  |||| ||||||||| | ||||||| ||||||||||||    
T  11587854 aaaacaactcataatatctctttcccatacaatattaattatatttcttaatatgtgtgaaatgctcaaaacgtcatataatttg 11587770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 309
Target Start/End: Original strand, 37505093 - 37505225
Alignment:
Q  181 aattctttaatttatctttcttatatcattaa-----gatgattttgtaaaaataacttataatttatctttctcatacaacattagttatattttctaa 275  Q
    |||||||| |||||||||||| |||||||| |     ||| |||||||||||  |||| ||||| | |||||| || |||| |||| ||| ||||| |||    
T  37505093 aattctttcatttatctttctcatatcatttattaaggataattttgtaaaac-aactcataatatctctttcccacacaatattaattacattttttaa 37505191  T
Q  276 tttgtgtgaaaagatcaaaacatcatataatttg 309  Q
    | ||||||||| |  |||||| ||||||||||||    
T  37505192 tatgtgtgaaatgcccaaaacgtcatataatttg 37505225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 270
Target Start/End: Original strand, 1501181 - 1501275
Alignment:
Q  180 aaattctttaatttatctttcttatatcattaa-----gatgattttgtaaaaataacttataatttatctttctcatacaacattagttatattt 270  Q
    |||||||||||||||| ||||| |||||||||      ||||||||||||||| ||||||||||||| |||||||||||||| |||| ||| ||||    
T  1501181 aaattctttaatttatttttctcatatcattattgaatgatgattttgtaaaa-taacttataatttttctttctcatacaaaattaattacattt 1501275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 308
Target Start/End: Original strand, 4540595 - 4540678
Alignment:
Q  225 aaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataattt 308  Q
    ||||| ||||||||||| | ||||||||||| ||||| ||| ||||  || ||||||||||| ||  |||||||||||||||||    
T  4540595 aaaattacttataatttctttttctcatacatcattaattacatttcttactttgtgtgaaatgacgaaaacatcatataattt 4540678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 309
Target Start/End: Complemental strand, 48583987 - 48583895
Alignment:
Q  217 attttgtaaaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataatttg 309  Q
    ||||||||||||||||| ||||| |||||||| ||||||| |||| ||| ||||  |||  ||||||||| |  |||||| ||||| ||||||    
T  48583987 attttgtaaaaataactcataatatatctttcccatacaatattaattacatttcttaacatgtgtgaaatggccaaaacgtcatacaatttg 48583895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 309
Target Start/End: Complemental strand, 32100225 - 32100093
Alignment:
Q  181 aattctttaatttatctttcttatatcattaa-----gatgattttgtaaaaataacttataatttatctttctcatacaacattagttatattttctaa 275  Q
    |||||||| |||||||||||  |||||||| |     ||| |||||||||||  |||| ||||| | ||||||||| |||| |||| ||| ||||  |||    
T  32100225 aattctttcatttatctttcccatatcatttattaaggataattttgtaaaac-aactcataatatctctttctcacacaatattaattacatttcttaa 32100127  T
Q  276 tttgtgtgaaaagatcaaaacatcatataatttg 309  Q
    ||||||||||| | ||||||| ||||| ||||||    
T  32100126 tttgtgtgaaatgctcaaaacgtcatacaatttg 32100093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 309
Target Start/End: Complemental strand, 22233444 - 22233371
Alignment:
Q  236 taatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataatttg 309  Q
    ||||||||||||  |||||||||||| |||  |||| |||||||||||||| ||||||||| || |||||||||    
T  22233444 taatttatcttttccatacaacattaattaagttttttaatttgtgtgaaatgatcaaaacgtcgtataatttg 22233371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 309
Target Start/End: Original strand, 50174498 - 50174630
Alignment:
Q  181 aattctttaatttatctttcttatatcattaa-----gatgattttgtaaaaataacttataatttatctttctcatacaacattagttatattttctaa 275  Q
    |||| ||||||||||||||| |||| | ||||     ||| ||||||||||| | ||||||||||| |||||| ||| |||||||| ||| | ||  |||    
T  50174498 aattatttaatttatctttcctataccgttaatgaaggataattttgtaaaa-tgacttataatttctctttcccatgcaacattaattacacttcttaa 50174596  T
Q  276 tttgtgtgaaaagatcaaaacatcatataatttg 309  Q
    ||||||||||| ||||||||  || |||||||||    
T  50174597 tttgtgtgaaatgatcaaaatgtcgtataatttg 50174630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 309
Target Start/End: Original strand, 37788061 - 37788145
Alignment:
Q  225 aaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataatttg 309  Q
    ||||||||| ||||||| |||||| || |||| |||| ||||||||  ||||  |||||||| |  |||||| ||||||||||||    
T  37788061 aaaataactcataatttctctttcccacacaatattaattatatttcttaatacgtgtgaaatggccaaaacgtcatataatttg 37788145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 48070391 - 48070319
Alignment:
Q  225 aaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaaca 297  Q
    ||||||||||||||| | |||||| ||||||| |||  ||||||||  |||||||||||||| ||||||||||    
T  48070391 aaaataacttataatctttctttcccatacaaaatttattatatttattaatttgtgtgaaatgatcaaaaca 48070319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 225 - 286
Target Start/End: Original strand, 1804599 - 1804660
Alignment:
Q  225 aaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaa 286  Q
    ||||| ||||||||||| |||||||||| |||||||| ||| ||||| || |||||||||||    
T  1804599 aaaattacttataatttctctttctcatgcaacattaattacattttttagtttgtgtgaaa 1804660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 309
Target Start/End: Complemental strand, 9411024 - 9410892
Alignment:
Q  181 aattctttaatttatctttcttatatcattaa-----gatgattttgtaaaaataacttataatttatctttctcatacaacattagttatattttctaa 275  Q
    |||||||| ||||||||||| ||||||||| |     ||  ||||||||||| ||||||||||| |||||||| || |||| |||| || |||||| |||    
T  9411024 aattctttcatttatctttcctatatcatttattaaggacaattttgtaaaa-taacttataatatatctttcccaaacaatattaattttattttttaa 9410926  T
Q  276 tttgtgtgaaaagatcaaaacatcatataatttg 309  Q
    | ||||||||| |  |||||| || |||||||||    
T  9410925 tatgtgtgaaatgtccaaaacgtcgtataatttg 9410892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 26755800 - 26755857
Alignment:
Q  230 aacttataatttatctttctcatacaacattagttatattttc-taatttgtgtgaaa 286  Q
    |||| ||||||| ||||| |||||||||||||||||| ||||| ||||||||||||||    
T  26755800 aactgataatttctctttttcatacaacattagttatcttttcttaatttgtgtgaaa 26755857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 286
Target Start/End: Complemental strand, 51596684 - 51596624
Alignment:
Q  226 aaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaa 286  Q
    |||||||| |||||||||| || | |||||| |||| ||||||||| ||||||||||||||    
T  51596684 aaataactcataatttatcatttttatacaatattaattatattttataatttgtgtgaaa 51596624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 306
Target Start/End: Complemental strand, 44441301 - 44441220
Alignment:
Q  225 aaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataat 306  Q
    ||||| || |||||||||||||||| ||| || |||| ||||||||| |||| | ||| |||| |||||||| || ||||||    
T  44441301 aaaatcacatataatttatctttctaatataatattaattatattttttaatatatgtaaaaatatcaaaacgtcttataat 44441220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 295
Target Start/End: Original strand, 37742843 - 37742897
Alignment:
Q  241 tatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaa 295  Q
    |||||||||||||||| |||| ||| |||||||||| ||||||||| ||||||||    
T  37742843 tatctttctcatacaaaattaattacattttctaatatgtgtgaaatgatcaaaa 37742897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 308
Target Start/End: Complemental strand, 42141864 - 42141781
Alignment:
Q  225 aaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataattt 308  Q
    ||||| |||||||||||||||||  ||||||| |||| ||| | ||  |||||||||| ||| |||||| || |||||||||||    
T  42141864 aaaatgacttataatttatcttttccatacaatattaattacacttcttaatttgtgtaaaatgatcaatacgtcatataattt 42141781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 265
Target Start/End: Original strand, 38766331 - 38766371
Alignment:
Q  225 aaaataacttataatttatctttctcatacaacattagtta 265  Q
    ||||||||||||||||||| ||||||| |||| ||||||||    
T  38766331 aaaataacttataatttatttttctcaaacaaaattagtta 38766371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 309
Target Start/End: Complemental strand, 39958256 - 39958172
Alignment:
Q  225 aaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataatttg 309  Q
    |||| |||||||||||| |||| | || |||| |||| ||| ||||| ||||  |||||||| || |||||| ||||||||||||    
T  39958256 aaaacaacttataatttctcttccccacacaatattaattacattttttaatacgtgtgaaatgaccaaaacgtcatataatttg 39958172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 314
Target Start/End: Original strand, 7196799 - 7196887
Alignment:
Q  226 aaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataatttgagatg 314  Q
    |||||||| ||||||| ||||| |||||||| |||| ||| ||||  |||||||||||||| | ||||||   | ||||||||||||||    
T  7196799 aaataactcataatttttctttatcatacaaaattaattacatttcttaatttgtgtgaaatggtcaaaatgacttataatttgagatg 7196887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 9976519 - 9976583
Alignment:
Q  225 aaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaaga 289  Q
    ||||| ||||||||||||||||||| ||||||||||| ||| | ||| ||||| || ||||||||    
T  9976519 aaaattacttataatttatctttcttatacaacattaattacactttttaattcgtatgaaaaga 9976583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University