View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4951_low_3 (Length: 458)

Name: NF4951_low_3
Description: NF4951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4951_low_3
NF4951_low_3
[»] chr7 (6 HSPs)
chr7 (13-301)||(5104806-5105092)
chr7 (196-293)||(2344793-2344889)
chr7 (381-441)||(5104127-5104187)
chr7 (383-441)||(5110704-5110762)
chr7 (252-293)||(48021496-48021537)
chr7 (204-288)||(24161820-24161904)
[»] chr6 (3 HSPs)
chr6 (160-288)||(32243293-32243425)
chr6 (214-288)||(10101330-10101404)
chr6 (196-281)||(229053-229138)
[»] chr8 (4 HSPs)
chr8 (205-288)||(27116736-27116819)
chr8 (204-291)||(16736441-16736528)
chr8 (204-288)||(11587770-11587854)
chr8 (160-288)||(37505093-37505225)
[»] chr3 (4 HSPs)
chr3 (159-249)||(1501181-1501275)
chr3 (204-287)||(4540595-4540678)
chr3 (196-288)||(48583895-48583987)
chr3 (160-288)||(32100093-32100225)
[»] chr4 (3 HSPs)
chr4 (215-288)||(22233371-22233444)
chr4 (160-288)||(50174498-50174630)
chr4 (204-288)||(37788061-37788145)
[»] chr1 (6 HSPs)
chr1 (204-276)||(48070319-48070391)
chr1 (204-265)||(1804599-1804660)
chr1 (160-288)||(9410892-9411024)
chr1 (209-265)||(26755800-26755857)
chr1 (205-265)||(51596624-51596684)
chr1 (204-285)||(44441220-44441301)
[»] chr2 (4 HSPs)
chr2 (220-274)||(37742843-37742897)
chr2 (204-287)||(42141781-42141864)
chr2 (204-244)||(38766331-38766371)
chr2 (204-288)||(39958172-39958256)
[»] chr5 (2 HSPs)
chr5 (205-293)||(7196799-7196887)
chr5 (204-268)||(9976519-9976583)


Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 301
Target Start/End: Complemental strand, 5105092 - 5104806
Alignment:
13 atactcattatatcttaaattataagtcgttttagagnnnnnnnncttatttcagattataagttgtttcacaatatcaataaagcattaaatactattt 112  Q
    |||| ||||||||||||||||||||||||||||||||        ||| ||| | |||||||||||||||||||||||||| ||||||||||||||||||    
5105092 atacccattatatcttaaattataagtcgttttagagaaaaaaaacttgttttaaattataagttgtttcacaatatcaatgaagcattaaatactattt 5104993  T
113 ttcttaatataacttcaatttacaactatttcttacnnnnnnnnnnaaattctttaatttatctttcttatatcattaagatgattttgtaaaaataact 212  Q
    ||||||||||||||||||||||||||||||||||||          || ||||||||||||||||||||||||||||||||| ||||||||||| | |||    
5104992 ttcttaatataacttcaatttacaactatttcttactttttttttcaa-ttctttaatttatctttcttatatcattaagataattttgtaaaa-tgact 5104895  T
213 tataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataatttgagatgttgagagt 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
5104894 tataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcgtataatttgagatgttgagagt 5104806  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 196 - 293
Target Start/End: Complemental strand, 2344889 - 2344793
Alignment:
196 attttgtaaaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataatttgagatg 293  Q
    ||||||||||| || |||||||||| ||||| ||||||||||||| ||| | ||  |||||||||| ||| |||||||||||||||||||||||||||    
2344889 attttgtaaaacta-cttataatttctctttttcatacaacattatttacacttcttaatttgtgtaaaatgatcaaaacatcatataatttgagatg 2344793  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 381 - 441
Target Start/End: Complemental strand, 5104187 - 5104127
Alignment:
381 agaatttaccggtatccctctggtttctcaggccaatactcaatgaattctcctgaaggtg 441  Q
    ||||||||||||||||| |||||||||||||||||||||  | ||||||||||||||||||    
5104187 agaatttaccggtatccatctggtttctcaggccaataccaagtgaattctcctgaaggtg 5104127  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 383 - 441
Target Start/End: Complemental strand, 5110762 - 5110704
Alignment:
383 aatttaccggtatccctctggtttctcaggccaatactcaatgaattctcctgaaggtg 441  Q
    |||||||||||||||||||||||||||||||||||| ||| | |||||||| |||||||    
5110762 aatttaccggtatccctctggtttctcaggccaatattcagtaaattctccagaaggtg 5110704  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 293
Target Start/End: Complemental strand, 48021537 - 48021496
Alignment:
252 taatttgtgtgaaaagatcaaaacatcatataatttgagatg 293  Q
    |||||||||||||| |||||||| |||||||||||| |||||    
48021537 taatttgtgtgaaatgatcaaaatatcatataatttaagatg 48021496  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 288
Target Start/End: Original strand, 24161820 - 24161904
Alignment:
204 aaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataatttg 288  Q
    |||| |||| ||||||| |||| |||| |||| |||| ||||||||  ||||  |||||||| || |||||||||||| ||||||    
24161820 aaaacaactcataatttctcttcctcacacaatattaattatatttcttaatacgtgtgaaatgaccaaaacatcatacaatttg 24161904  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 288
Target Start/End: Original strand, 32243293 - 32243425
Alignment:
160 aattctttaatttatctttcttatatcattaa-----gatgattttgtaaaaataacttataatttatctttctcatacaacattagttatattttctaa 254  Q
    |||||||||||||||||||| | || ||||||     ||| ||||||||||| ||  ||||||||| ||||| ||||||||||||| ||| ||||| |||    
32243293 aattctttaatttatctttcatgtaccattaatgaaggataattttgtaaaattat-ttataatttctctttttcatacaacattaattacattttttaa 32243391  T
255 tttgtgtgaaaagatcaaaacatcatataatttg 288  Q
    ||||||| ||| ||  ||||| ||||||||||||    
32243392 tttgtgtaaaatgactaaaacgtcatataatttg 32243425  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 288
Target Start/End: Complemental strand, 10101404 - 10101330
Alignment:
214 ataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataatttg 288  Q
    ||||||| |||||||||||||| ||||||||||  |  |||||||||| ||| |||||| || ||||||||||||    
10101404 ataatttctctttctcatacaatattagttatacatcttaatttgtgtaaaatgatcaatacgtcatataatttg 10101330  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 281
Target Start/End: Complemental strand, 229138 - 229053
Alignment:
196 attttgtaaaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcata 281  Q
    ||||| || |||| |||| |||||| ||||| |||||| |||||| ||| | ||  |||||||| ||||| |||||||||||||||    
229138 attttttataaatgacttgtaatttctctttttcatacgacattaattacagttcttaatttgtatgaaatgatcaaaacatcata 229053  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 288
Target Start/End: Original strand, 27116736 - 27116819
Alignment:
205 aaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataatttg 288  Q
    |||| |||||||||||||||||  |||||||||||| ||| ||||  |||||||||||||| |||| ||| |||||||| ||||    
27116736 aaattacttataatttatcttttccatacaacattaattacatttcttaatttgtgtgaaatgatcgaaatatcatatagtttg 27116819  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 291
Target Start/End: Complemental strand, 16736528 - 16736441
Alignment:
204 aaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataatttgaga 291  Q
    |||| |||||||||||| |||| | || |||| |||| ||| ||||| ||||  |||||||| ||||||||||||||| |||||||||    
16736528 aaaacaacttataatttctcttccccacacaatattaattacattttttaatacgtgtgaaatgatcaaaacatcatacaatttgaga 16736441  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 288
Target Start/End: Complemental strand, 11587854 - 11587770
Alignment:
204 aaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataatttg 288  Q
    |||| |||| ||||| | |||||| ||||||| |||| ||||||||  |||| ||||||||| | ||||||| ||||||||||||    
11587854 aaaacaactcataatatctctttcccatacaatattaattatatttcttaatatgtgtgaaatgctcaaaacgtcatataatttg 11587770  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 288
Target Start/End: Original strand, 37505093 - 37505225
Alignment:
160 aattctttaatttatctttcttatatcattaa-----gatgattttgtaaaaataacttataatttatctttctcatacaacattagttatattttctaa 254  Q
    |||||||| |||||||||||| |||||||| |     ||| |||||||||||  |||| ||||| | |||||| || |||| |||| ||| ||||| |||    
37505093 aattctttcatttatctttctcatatcatttattaaggataattttgtaaaac-aactcataatatctctttcccacacaatattaattacattttttaa 37505191  T
255 tttgtgtgaaaagatcaaaacatcatataatttg 288  Q
    | ||||||||| |  |||||| ||||||||||||    
37505192 tatgtgtgaaatgcccaaaacgtcatataatttg 37505225  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 159 - 249
Target Start/End: Original strand, 1501181 - 1501275
Alignment:
159 aaattctttaatttatctttcttatatcattaa-----gatgattttgtaaaaataacttataatttatctttctcatacaacattagttatattt 249  Q
    |||||||||||||||| ||||| |||||||||      ||||||||||||||| ||||||||||||| |||||||||||||| |||| ||| ||||    
1501181 aaattctttaatttatttttctcatatcattattgaatgatgattttgtaaaa-taacttataatttttctttctcatacaaaattaattacattt 1501275  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 287
Target Start/End: Original strand, 4540595 - 4540678
Alignment:
204 aaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataattt 287  Q
    ||||| ||||||||||| | ||||||||||| ||||| ||| ||||  || ||||||||||| ||  |||||||||||||||||    
4540595 aaaattacttataatttctttttctcatacatcattaattacatttcttactttgtgtgaaatgacgaaaacatcatataattt 4540678  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 288
Target Start/End: Complemental strand, 48583987 - 48583895
Alignment:
196 attttgtaaaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataatttg 288  Q
    ||||||||||||||||| ||||| |||||||| ||||||| |||| ||| ||||  |||  ||||||||| |  |||||| ||||| ||||||    
48583987 attttgtaaaaataactcataatatatctttcccatacaatattaattacatttcttaacatgtgtgaaatggccaaaacgtcatacaatttg 48583895  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 288
Target Start/End: Complemental strand, 32100225 - 32100093
Alignment:
160 aattctttaatttatctttcttatatcattaa-----gatgattttgtaaaaataacttataatttatctttctcatacaacattagttatattttctaa 254  Q
    |||||||| |||||||||||  |||||||| |     ||| |||||||||||  |||| ||||| | ||||||||| |||| |||| ||| ||||  |||    
32100225 aattctttcatttatctttcccatatcatttattaaggataattttgtaaaac-aactcataatatctctttctcacacaatattaattacatttcttaa 32100127  T
255 tttgtgtgaaaagatcaaaacatcatataatttg 288  Q
    ||||||||||| | ||||||| ||||| ||||||    
32100126 tttgtgtgaaatgctcaaaacgtcatacaatttg 32100093  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 288
Target Start/End: Complemental strand, 22233444 - 22233371
Alignment:
215 taatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataatttg 288  Q
    ||||||||||||  |||||||||||| |||  |||| |||||||||||||| ||||||||| || |||||||||    
22233444 taatttatcttttccatacaacattaattaagttttttaatttgtgtgaaatgatcaaaacgtcgtataatttg 22233371  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 160 - 288
Target Start/End: Original strand, 50174498 - 50174630
Alignment:
160 aattctttaatttatctttcttatatcattaa-----gatgattttgtaaaaataacttataatttatctttctcatacaacattagttatattttctaa 254  Q
    |||| ||||||||||||||| |||| | ||||     ||| ||||||||||| | ||||||||||| |||||| ||| |||||||| ||| | ||  |||    
50174498 aattatttaatttatctttcctataccgttaatgaaggataattttgtaaaa-tgacttataatttctctttcccatgcaacattaattacacttcttaa 50174596  T
255 tttgtgtgaaaagatcaaaacatcatataatttg 288  Q
    ||||||||||| ||||||||  || |||||||||    
50174597 tttgtgtgaaatgatcaaaatgtcgtataatttg 50174630  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 288
Target Start/End: Original strand, 37788061 - 37788145
Alignment:
204 aaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataatttg 288  Q
    ||||||||| ||||||| |||||| || |||| |||| ||||||||  ||||  |||||||| |  |||||| ||||||||||||    
37788061 aaaataactcataatttctctttcccacacaatattaattatatttcttaatacgtgtgaaatggccaaaacgtcatataatttg 37788145  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 276
Target Start/End: Complemental strand, 48070391 - 48070319
Alignment:
204 aaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaaca 276  Q
    ||||||||||||||| | |||||| ||||||| |||  ||||||||  |||||||||||||| ||||||||||    
48070391 aaaataacttataatctttctttcccatacaaaatttattatatttattaatttgtgtgaaatgatcaaaaca 48070319  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 204 - 265
Target Start/End: Original strand, 1804599 - 1804660
Alignment:
204 aaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaa 265  Q
    ||||| ||||||||||| |||||||||| |||||||| ||| ||||| || |||||||||||    
1804599 aaaattacttataatttctctttctcatgcaacattaattacattttttagtttgtgtgaaa 1804660  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 160 - 288
Target Start/End: Complemental strand, 9411024 - 9410892
Alignment:
160 aattctttaatttatctttcttatatcattaa-----gatgattttgtaaaaataacttataatttatctttctcatacaacattagttatattttctaa 254  Q
    |||||||| ||||||||||| ||||||||| |     ||  ||||||||||| ||||||||||| |||||||| || |||| |||| || |||||| |||    
9411024 aattctttcatttatctttcctatatcatttattaaggacaattttgtaaaa-taacttataatatatctttcccaaacaatattaattttattttttaa 9410926  T
255 tttgtgtgaaaagatcaaaacatcatataatttg 288  Q
    | ||||||||| |  |||||| || |||||||||    
9410925 tatgtgtgaaatgtccaaaacgtcgtataatttg 9410892  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 26755800 - 26755857
Alignment:
209 aacttataatttatctttctcatacaacattagttatattttc-taatttgtgtgaaa 265  Q
    |||| ||||||| ||||| |||||||||||||||||| ||||| ||||||||||||||    
26755800 aactgataatttctctttttcatacaacattagttatcttttcttaatttgtgtgaaa 26755857  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 265
Target Start/End: Complemental strand, 51596684 - 51596624
Alignment:
205 aaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaa 265  Q
    |||||||| |||||||||| || | |||||| |||| ||||||||| ||||||||||||||    
51596684 aaataactcataatttatcatttttatacaatattaattatattttataatttgtgtgaaa 51596624  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 285
Target Start/End: Complemental strand, 44441301 - 44441220
Alignment:
204 aaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataat 285  Q
    ||||| || |||||||||||||||| ||| || |||| ||||||||| |||| | ||| |||| |||||||| || ||||||    
44441301 aaaatcacatataatttatctttctaatataatattaattatattttttaatatatgtaaaaatatcaaaacgtcttataat 44441220  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 274
Target Start/End: Original strand, 37742843 - 37742897
Alignment:
220 tatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaa 274  Q
    |||||||||||||||| |||| ||| |||||||||| ||||||||| ||||||||    
37742843 tatctttctcatacaaaattaattacattttctaatatgtgtgaaatgatcaaaa 37742897  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 287
Target Start/End: Complemental strand, 42141864 - 42141781
Alignment:
204 aaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataattt 287  Q
    ||||| |||||||||||||||||  ||||||| |||| ||| | ||  |||||||||| ||| |||||| || |||||||||||    
42141864 aaaatgacttataatttatcttttccatacaatattaattacacttcttaatttgtgtaaaatgatcaatacgtcatataattt 42141781  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 38766331 - 38766371
Alignment:
204 aaaataacttataatttatctttctcatacaacattagtta 244  Q
    ||||||||||||||||||| ||||||| |||| ||||||||    
38766331 aaaataacttataatttatttttctcaaacaaaattagtta 38766371  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 288
Target Start/End: Complemental strand, 39958256 - 39958172
Alignment:
204 aaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataatttg 288  Q
    |||| |||||||||||| |||| | || |||| |||| ||| ||||| ||||  |||||||| || |||||| ||||||||||||    
39958256 aaaacaacttataatttctcttccccacacaatattaattacattttttaatacgtgtgaaatgaccaaaacgtcatataatttg 39958172  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 293
Target Start/End: Original strand, 7196799 - 7196887
Alignment:
205 aaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaagatcaaaacatcatataatttgagatg 293  Q
    |||||||| ||||||| ||||| |||||||| |||| ||| ||||  |||||||||||||| | ||||||   | ||||||||||||||    
7196799 aaataactcataatttttctttatcatacaaaattaattacatttcttaatttgtgtgaaatggtcaaaatgacttataatttgagatg 7196887  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 268
Target Start/End: Original strand, 9976519 - 9976583
Alignment:
204 aaaataacttataatttatctttctcatacaacattagttatattttctaatttgtgtgaaaaga 268  Q
    ||||| ||||||||||||||||||| ||||||||||| ||| | ||| ||||| || ||||||||    
9976519 aaaattacttataatttatctttcttatacaacattaattacactttttaattcgtatgaaaaga 9976583  T

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