View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4951_low_7 (Length: 237)
Name: NF4951_low_7
Description: NF4951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4951_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 39135881 - 39135764
Alignment:
| Q |
1 |
ttcaactatagaaactataacctctcagcaattacaagaacacctcaacatcctgggaagnnnnnnnnnnnnnctttcaaccttcagctttgaaatcttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39135881 |
ttcaactatagaaactataacctctcagcaattacaagaacacctcaacatcctgggaagaaaaaaataaaaactttcaaccttcagctttgaaatcttt |
39135782 |
T |
|
| Q |
101 |
gaaaaatttccaggacat |
118 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
39135781 |
gaaaaatttccaggacat |
39135764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 39135704 - 39135660
Alignment:
| Q |
177 |
cttttcaagtatacatatttaatagctctaacattacatgatatt |
221 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39135704 |
cttttcaagtatacacatttaatagctctaacattacatgatatt |
39135660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 39488556 - 39488589
Alignment:
| Q |
25 |
tcagcaattacaagaacacctcaacatcctggga |
58 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
|
|
| T |
39488556 |
tcagcaattacaagaacacctcaaaatcctggga |
39488589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 19806264 - 19806205
Alignment:
| Q |
1 |
ttcaactatagaaactataacctctcagcaattacaagaacacctcaacatcctgggaag |
60 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19806264 |
ttcaactatagaaactgtaacttctcagcaattacaagaacacctcaaaatcctgggaag |
19806205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University