View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4951_low_8 (Length: 227)
Name: NF4951_low_8
Description: NF4951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4951_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 4244363 - 4244142
Alignment:
| Q |
2 |
atcaaaagattcctacattgagtaaagaaatcgccaaactcattgtggtggatagtgttagagagaatggctttagtaaggatcttactgtcagtttcat |
101 |
Q |
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| T |
4244363 |
atcaaaagattcctacattgagtaaagagatcgccaaactcattgtggtggatagtgttagagagaatggctttagtaaggatcttactgtcagtttcat |
4244264 |
T |
|
| Q |
102 |
agtacacatgatggaatccagacgagattgataatttcgtagcttaaagtaaagtaattgcctcggcttctagaaccgataaagatgagtgaatgatggc |
201 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4244263 |
agtacacatgatggaatccagaagagattgataatttcatagcttcaagtaaaacgattgcctcggcttctagaacagataaagatgagtgaatgatggc |
4244164 |
T |
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| Q |
202 |
agatttacccaagaagagttca |
223 |
Q |
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|||||||||||||| ||||||| |
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| T |
4244163 |
agatttacccaagaggagttca |
4244142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 2 - 212
Target Start/End: Original strand, 33495211 - 33495423
Alignment:
| Q |
2 |
atcaaaagattcctacattgagtaaagaaatcgccaaactcattgtggtggatagtgttagagagaatggctttagtaaggatcttactgtcagtttcat |
101 |
Q |
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||||||||||||||||||||||||| | ||| ||||||||||||||||||||| || ||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
33495211 |
atcaaaagattcctacattgagtaacaagatcaccaaactcattgtggtggataatgatagagaggatggctttagttaggatcttactgtcagtttcat |
33495310 |
T |
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| Q |
102 |
agtacacatgatggaatccagacgagattgataatttcgtagcttaaagtaaagtaat--tgcctcggcttctagaaccgataaagatgagtgaatgatg |
199 |
Q |
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|||||||||||||||||||||| ||||||||||||||| || | | |||||||| ||| ||||||||||||||||| ||||||||||| ||||||||| |
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| T |
33495311 |
agtacacatgatggaatccagaggagattgataatttcataacgtcaagtaaagcaattgtgcctcggcttctagaagagataaagatgaatgaatgatg |
33495410 |
T |
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| Q |
200 |
gcagatttaccca |
212 |
Q |
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| ||||||||||| |
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| T |
33495411 |
gaagatttaccca |
33495423 |
T |
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