View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4951_low_9 (Length: 225)
Name: NF4951_low_9
Description: NF4951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4951_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 1458928 - 1458744
Alignment:
| Q |
19 |
atggcagaaaactacgcaactaacatcgatacaaattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgcatgctca |
118 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1458928 |
atggcagaaaactacgcgactaacattgatacaaattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgtatgctca |
1458829 |
T |
|
| Q |
119 |
attttgaaaagtatttgagctgcagggaccaaactatactcttcccatttagtcattccccaaactaaatcatctttcttataat |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1458828 |
attttgaaaagtatttgagctgcagggaccaaactatactcttcccatttagtcattccccaaactaaatcatctttcttataat |
1458744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 2428635 - 2428451
Alignment:
| Q |
19 |
atggcagaaaactacgcaactaacatcgatacaaattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgcatgctca |
118 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2428635 |
atggcagaaaactacgcgactaacattgatacaaattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgtatgctca |
2428536 |
T |
|
| Q |
119 |
attttgaaaagtatttgagctgcagggaccaaactatactcttcccatttagtcattccccaaactaaatcatctttcttataat |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||| |
|
|
| T |
2428535 |
attttgaaaagtatttgagctgcagggaccaaactatactcttcccagttagtaataccccaaactaaatcatctttcttataat |
2428451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 51 - 203
Target Start/End: Original strand, 2498021 - 2498173
Alignment:
| Q |
51 |
aaattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgcatgctcaattttgaaaagtatttgagctgcagggaccaa |
150 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
2498021 |
aaattgaaattgttgaaaacataccgagtattccagtatagtaggaaagtgggacatcagtgtgctcaattttgaaaagtatttgagatgaagggaccaa |
2498120 |
T |
|
| Q |
151 |
actatactcttcccatttagtcattccccaaactaaatcatctttcttataat |
203 |
Q |
| |
|
|| ||||||||||||||| | |||||||||||||||| ||| |||||||| |
|
|
| T |
2498121 |
gctgtactcttcccatttacagaatccccaaactaaatcaccttccttataat |
2498173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 51 - 203
Target Start/End: Original strand, 2517831 - 2517983
Alignment:
| Q |
51 |
aaattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgcatgctcaattttgaaaagtatttgagctgcagggaccaa |
150 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||| || ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2517831 |
aaattgaaattgttgaatacataccaagaattccagtatagtacgaaagaggaacatctgtgtgttcaattttgaaaagtatttgagctgcagggatcaa |
2517930 |
T |
|
| Q |
151 |
actatactcttcccatttagtcattccccaaactaaatcatctttcttataat |
203 |
Q |
| |
|
|| ||||||||||| ||||| | ||||| ||||||||| ||| |||||||| |
|
|
| T |
2517931 |
gctgtactcttcccaattagtaaacccccacactaaatcaccttccttataat |
2517983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 67 - 203
Target Start/End: Original strand, 2506970 - 2507106
Alignment:
| Q |
67 |
atacataccgagaattccagtatagtaggaaagtgggacatctgcatgctcaattttgaaaagtatttgagctgcagggaccaaactatactcttcccat |
166 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| || ||||| | |||||||||||||||| ||||||| || ||||||| ||| || ||||||||||| |
|
|
| T |
2506970 |
atacatacctagaattccagtatagtaggaaagaggaacatcagtatgctcaattttgaaatgtatttgtgccgcagggatcaagctgtactcttcccaa |
2507069 |
T |
|
| Q |
167 |
ttagtcattccccaaactaaatcatctttcttataat |
203 |
Q |
| |
|
||||| || ||||| |||| |||| ||| |||||||| |
|
|
| T |
2507070 |
ttagttatcccccacactatatcaccttccttataat |
2507106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 2431613 - 2431430
Alignment:
| Q |
19 |
atggcagaaaactacgcaactaacatcgatacaaattgaaattgttgaatacata--ccgagaattccagtatagtaggaaagtgggacatctgcatgct |
116 |
Q |
| |
|
|||| |||||||||||| | ||| ||| ||| ||||||||||||||||| |||| || ||||| || | || ||||||||||||||||| |||| |
|
|
| T |
2431613 |
atggaagaaaactacgcgattaatatcaatataaattgaaattgttgaacgcatataccaagaatcccgatgtaataggaaagtgggacatcattgtgct |
2431514 |
T |
|
| Q |
117 |
caattttgaaaagtatttgagctgcagggaccaaactatactcttcccatttagtcattccccaaactaaatcatctttcttataat |
203 |
Q |
| |
|
|||||||| | | || || || |||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||| |
|
|
| T |
2431513 |
caattttgtaca---ttccagttgtagggaccaaactatactcttcccagttagtaataccccaaactaaatcatctttcttataat |
2431430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 51 - 180
Target Start/End: Original strand, 2513614 - 2513743
Alignment:
| Q |
51 |
aaattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgcatgctcaattttgaaaagtatttgagctgcagggaccaa |
150 |
Q |
| |
|
||||||||||||| || ||||||| |||||||| |||||||||||||| || ||||| | ||||||||||| ||| ||||||| |||||||||| ||| |
|
|
| T |
2513614 |
aaattgaaattgtggatcacataccaagaattcctgtatagtaggaaagaggaacatcagtgtgctcaattttaaaatgtatttgtgctgcagggatcaa |
2513713 |
T |
|
| Q |
151 |
actatactcttcccatttagtcattcccca |
180 |
Q |
| |
|
|| ||||||||||| ||||| || ||||| |
|
|
| T |
2513714 |
gctgtactcttcccaattagttatccccca |
2513743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 72 - 203
Target Start/End: Complemental strand, 2434943 - 2434815
Alignment:
| Q |
72 |
taccgagaattccagtatagtaggaaagtgggacatctgcatgctcaattttgaaaagtatttgagctgcagggaccaaactatactcttcccatttagt |
171 |
Q |
| |
|
|||| |||||||| ||||| ||||||||||||||||| |||||||||||||||| || || || ||| |||||||||||||||||||||||||| |
|
|
| T |
2434943 |
taccaagaattccggtataataggaaagtgggacatcattgtgctcaattttgaaaa---ttccagttgtaggaaccaaactatactcttcccatttagt |
2434847 |
T |
|
| Q |
172 |
cattccccaaactaaatcatctttcttataat |
203 |
Q |
| |
|
| | ||||||| |||||||||||||||||| |
|
|
| T |
2434846 |
aagactccaaactgaatcatctttcttataat |
2434815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 113 - 203
Target Start/End: Original strand, 50703468 - 50703557
Alignment:
| Q |
113 |
tgctcaattttgaaaagtatttgagctgcagggaccaaactatactcttcccatttagtcattccccaaactaaatcatctttcttataat |
203 |
Q |
| |
|
||||||||||||||||||||||||| | ||| ||||| || ||||||||||||||| | |||||||||| ||||| ||| |||||||| |
|
|
| T |
50703468 |
tgctcaattttgaaaagtatttgagat-aaggtaccaagctgtactcttcccatttacagaatccccaaacttaatcaccttccttataat |
50703557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University