View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4952-Insertion-1 (Length: 961)
Name: NF4952-Insertion-1
Description: NF4952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4952-Insertion-1 |
 | |
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| [»] chr5 (14 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 770; Significance: 0; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 770; E-Value: 0
Query Start/End: Original strand, 7 - 961
Target Start/End: Complemental strand, 1058241 - 1057282
Alignment:
| Q |
7 |
aggagatattggtgcctgtccattcggctgaaaaactatagttggggaaaagaacagcagatagatgcaggtcaagcaacatcaaagaagttcaaatcaa |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1058241 |
aggagatattggtgcctgtccattcggctgaaaaactatagttggggaaaagaacag---atagatgcaggtcaagcaacatcaaagaagttgaaatcaa |
1058145 |
T |
|
| Q |
107 |
taaaa-tccctcatttatgttttatgtcttttcaaaattatttcaggcatgtatcttcatgcaaagaaacttggataatttgaagaaataaaa-atacca |
204 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1058144 |
taaaaatccctcatttatgttttatgtcttttcaaaattatttcaggcatgtatcttcatgcaaagaaacttggataatttgaagaaataaaacatacca |
1058045 |
T |
|
| Q |
205 |
gtatcagaaactcttccaacgtgccaaatctgacagaagaaggtagcacctttggcatggacagcatccacaataggtttccacgcctcgacgtgctctt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1058044 |
gtatcagaaactcttccaacgtgccaaatctgacagaagaaggtagcacctttggcatggacagcatccacaataggtttccacgcctcgacgtgctctt |
1057945 |
T |
|
| Q |
305 |
tagtccaaatacctggcgtatctggatacccttgagcggtgtcagatataccggtagcttcggttatgagaagacctccgttagaaccggctgctctctg |
404 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1057944 |
tagtccaaatacctggcgtgtctggatacccttgagcggtgtcagatataccggtagcttcggttatgagaagacctccgttagaaccggctgctctctg |
1057845 |
T |
|
| Q |
405 |
agagtaatagaggatagcatgaggttgtggaacattgccataggatctgtttcttgtgagtggtgccaaaacaactctgaaatgaaatgagtaaattaca |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1057844 |
agagtaatagaggatagcatgaggttgtggaacattgccataggatctgtttcttgtgagtggtgccaaaacaactctgaaatgaaatgagtaaattaca |
1057745 |
T |
|
| Q |
505 |
gtaacacatagtgagtgatatgatatatttgagatgcactttgaaattcaatggaataaatgaatgaaaagataattaaaatacctatgagctagattga |
604 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1057744 |
gtaacacatagtgagtgatatgatatatttgagatgcactttgaaatgcaatggaataaatgaatgaaaagataattaaaatacctatgagatagattga |
1057645 |
T |
|
| Q |
605 |
attttctcattttgtaaggagtgagaagtggaattggatcagattcaacaataccagccattatta---attagtt-tttacttgattaaagtgatacag |
700 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||| |
|
|
| T |
1057644 |
attttcccattttgtaaggagtgagaagtggaattggatcagattcaacaataccagccattattagtttttacttgattacttgattaaagtgatacag |
1057545 |
T |
|
| Q |
701 |
aatggaatgtgaagtttaaattg----aagtactttatatatagtgaaactataagtggaaagtggtggcggc-tttgtgtttataattgttgattgtga |
795 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1057544 |
aatggaatgtgaagtttaaattgaagtaagtaatttatatatagtg--actataagtggaaagtggtggcggcttttgtgtttataattgttgattgtg- |
1057448 |
T |
|
| Q |
796 |
cgtcacgtgtgcgattgcgttgcatgttctctctgacattggagttggtccctcaccgcagtccaatttgactacttttgatcacaaaa---tactccaa |
892 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1057447 |
----acgtgtgcgattgcgttgcatgttctctctgacattggagttggtccctcaccgcagtccaatttgactacttttgatcacaaaatactactccat |
1057352 |
T |
|
| Q |
893 |
taatggtggtag--gaagtaggtgactaatgaaatcaccacacaaaatattatggatcgggtgataattct |
961 |
Q |
| |
|
| || || | | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1057351 |
tgttgctgatcgtagaagtaggtgactaatgaaatcaccacacaaaatattatggatc-ggtgataattct |
1057282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 207 - 501
Target Start/End: Complemental strand, 1065078 - 1064784
Alignment:
| Q |
207 |
atcagaaactcttccaacgtgccaaatctgacagaagaaggtagcacctttggcatggacagcatccacaataggtttccacgcctcgacgtgctcttta |
306 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||| |||||||||||| ||||| |||||||||||||| |||||||| |||||||| ||||||||| |
|
|
| T |
1065078 |
atcagaaactcttccaacatgccaaatctgacaaaagatggtagcacctttagcatgaacagcatccacaatgggtttccatgcctcgacatgctcttta |
1064979 |
T |
|
| Q |
307 |
gtccaaatacctggcgtatctggatacccttgagcggtgtcagatataccggtagcttcggttatgagaagacctccgttagaaccggctgctctctgag |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||| |||||||| | |
|
|
| T |
1064978 |
gtccaaatacctggcgtatctggatacccttgagcggtgtcagagacaccggtagcttcggttatgagaagacctccgttagagccggtggctctctgtg |
1064879 |
T |
|
| Q |
407 |
agtaatagaggatagcatgaggttgtggaacattgccataggatctgtttcttgtgagtggtgccaaaacaactctgaaatgaaatgagtaaatt |
501 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1064878 |
agtaatagaggatagcatgaggttgtggaacgttgccataagatctttgtcttgtgagtggtgccaaaacaactctgaaatgaaatgagtaaatt |
1064784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 165; E-Value: 9e-88
Query Start/End: Original strand, 179 - 666
Target Start/End: Complemental strand, 1070411 - 1069927
Alignment:
| Q |
179 |
gataatttgaagaaataaaa-ataccagtatcagaaactcttccaacgtgccaaatctgacagaagaaggtagcacctttggcatggacagcatccacaa |
277 |
Q |
| |
|
|||||||||| |||||| || |||||||||||||||||||||||||| |||||||| |||||||| || | | |||||| |||| ||||||||||||| |
|
|
| T |
1070411 |
gataatttgatgaaatagaacataccagtatcagaaactcttccaacatgccaaatttgacagaaaaatacaccgcctttgtcatgaacagcatccacaa |
1070312 |
T |
|
| Q |
278 |
taggtttccacgcctcgacgtgctctttagtccaaatacctggcgtatctggatacccttgagcggtgtcagatataccggtagcttcggttatgagaag |
377 |
Q |
| |
|
| |||||||| || ||||| |||||||||||||| ||||| ||||| | |||||| ||||||||||| ||||| | |||||||||||||| ||||||||| |
|
|
| T |
1070311 |
tgggtttccatgcatcgacttgctctttagtccatataccaggcgtgtttggatagccttgagcggtatcagagacaccggtagcttcggctatgagaag |
1070212 |
T |
|
| Q |
378 |
acctccgttagaaccggctgctctctgagagtaatagaggatagcatgaggttgtggaacattgccataggatctgtttcttgtgagtggtgccaaaaca |
477 |
Q |
| |
|
||| || ||||| ||||| |||||||| |||||||||||||||||||||||||| ||||| |||||||| | ||||||||| |||||||||||| |
|
|
| T |
1070211 |
accacctttaga------ggctctttgagagtagtagaggatagcatgaggttgtggaacgttgccgtaggatctctgtcttgtgagaggtgccaaaaca |
1070118 |
T |
|
| Q |
478 |
actctgaaatg-aaatgagtaaattacagtaacacatagtgagtgatatgatatatttgag-----atgcactttgaaattca--atggaataaatgaat |
569 |
Q |
| |
|
||||||||||| |||||||||||| ||| ||||||| ||| | | ||| ||||||||| | ||||||||||||| | ||||||| |||| | |
|
|
| T |
1070117 |
actctgaaatgaaaatgagtaaataacacaaacacatggtgtgcg---tga-atatttgagcaattaagcactttgaaattgaatatggaat-gatgagt |
1070023 |
T |
|
| Q |
570 |
gaaaagataattaaaatacctatgagctagattgaattttctcattttgtaaggagtgagaagtggaattggatcagattcaacaataccagccatt |
666 |
Q |
| |
|
||||| || ||| | ||||||||||| |||||||||||| | ||||||||||||||| ||||| ||||||| ||||||| |||||||||| |||||| |
|
|
| T |
1070022 |
gaaaatat-atttatatacctatgagatagattgaatttacccattttgtaaggagtaagaagaggaattgaatcagatccaacaatacctgccatt |
1069927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 162; E-Value: 6e-86
Query Start/End: Original strand, 210 - 486
Target Start/End: Complemental strand, 1032908 - 1032638
Alignment:
| Q |
210 |
agaaactcttccaacgtgccaaatctgacagaagaaggtagcacctttggcatggacagcatccacaataggtttccacgcctcgacgtgctctttagtc |
309 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1032908 |
agaaactcttccaacatgccaaatctgacagaagaatgtagcacctttggcatgaacagcatccacaataggtttccacgcctcgacatgctctttagtc |
1032809 |
T |
|
| Q |
310 |
caaatacctggcgtatctggatacccttgagcggtgtcagatataccggtagcttcggttatgagaagacctccgttagaaccggctgctctctgagagt |
409 |
Q |
| |
|
|| |||||||| || ||||||||||||||||| |||||||| | |||||||||||| | |||||||||||| || || || ||||||||| |||| |
|
|
| T |
1032808 |
catatacctggtgtgtctggatacccttgagcagtgtcagagacaccggtagcttcagctatgagaagaccaccttt------ggatgctctctgtgagt |
1032715 |
T |
|
| Q |
410 |
aatagaggatagcatgaggttgtggaacattgccataggatctgtttcttgtgagtggtgccaaaacaactctgaaa |
486 |
Q |
| |
|
||||||||| |||||||||||| ||||| |||||||| ||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
1032714 |
aatagaggacagcatgaggttgaggaacgttgccatatgatcttattctagtgagtggtgccaaaacaactctgaaa |
1032638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 162; E-Value: 6e-86
Query Start/End: Original strand, 210 - 486
Target Start/End: Complemental strand, 1052231 - 1051961
Alignment:
| Q |
210 |
agaaactcttccaacgtgccaaatctgacagaagaaggtagcacctttggcatggacagcatccacaataggtttccacgcctcgacgtgctctttagtc |
309 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1052231 |
agaaactcttccaacatgccaaatctgacagaagaatgtagcacctttggcatgaacagcatccacaataggtttccacgcctcgacatgctctttagtc |
1052132 |
T |
|
| Q |
310 |
caaatacctggcgtatctggatacccttgagcggtgtcagatataccggtagcttcggttatgagaagacctccgttagaaccggctgctctctgagagt |
409 |
Q |
| |
|
|| |||||||| || ||||||||||||||||| |||||||| | |||||||||||| | |||||||||||| || || || ||||||||| |||| |
|
|
| T |
1052131 |
catatacctggtgtgtctggatacccttgagcagtgtcagagacaccggtagcttcagctatgagaagaccaccttt------ggatgctctctgtgagt |
1052038 |
T |
|
| Q |
410 |
aatagaggatagcatgaggttgtggaacattgccataggatctgtttcttgtgagtggtgccaaaacaactctgaaa |
486 |
Q |
| |
|
||||||||| |||||||||||| ||||| |||||||| ||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
1052037 |
aatagaggacagcatgaggttgaggaacgttgccatatgatcttattctagtgagtggtgccaaaacaactctgaaa |
1051961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 11 - 191
Target Start/End: Complemental strand, 1065301 - 1065118
Alignment:
| Q |
11 |
gatattggtgcctgtccattcggctgaaaaactatagttgggg-aaaagaacagc-agatagat-gcaggtcaagcaacatcaaagaagttcaaatcaat |
107 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||| |||||||||| |||| || ||||||||| ||| | |||||||||||||||||| |
|
|
| T |
1065301 |
gatattggtgcctgtccatttggctgaaaaactgtagttgggggaaaagaacagatagatgcattgcaggtcaatcaaaagcaaagaagttcaaatcaac |
1065202 |
T |
|
| Q |
108 |
aaaatccctcatttatgttttatgtcttttcaaaattatttcaggcatgtatcttcatgcaaagaaacttggataatttgaaga |
191 |
Q |
| |
|
|||||| || |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1065201 |
aaaatcactgatttatgttttatgtcatttcaaaattattttaggcatgtatcttcatgcaaagaaacttggataatttgaaga |
1065118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 582 - 666
Target Start/End: Complemental strand, 1064729 - 1064645
Alignment:
| Q |
582 |
aaaatacctatgagctagattgaattttctcattttgtaaggagtgagaagtggaattggatcagattcaacaataccagccatt |
666 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1064729 |
aaaatacctatgagctagattgaattttctcattttgtaaggagtaagaagaggaattggatcagattcaacaataccagccatt |
1064645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 211 - 487
Target Start/End: Complemental strand, 1043315 - 1043045
Alignment:
| Q |
211 |
gaaactcttccaacgtgccaaatctgacagaagaaggtagcacctttggcatggacagcatccacaataggtttccacgcctcgacgtgctctttagtcc |
310 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| || || | |||||| |||| || ||||| || ||||||||||||||||| || ||||||||||||| |
|
|
| T |
1043315 |
gaaactcttccaacatgccaaatctgacagaaaaatataccgcctttgtcatgaaccgcatctacgataggtttccacgcctcaacttgctctttagtcc |
1043216 |
T |
|
| Q |
311 |
aaatacctggcgtatctggatacccttgagcggtgtcagatataccggtagcttcggttatgagaagacctccgttagaaccggctgctctctgagagta |
410 |
Q |
| |
|
| || |||||||| | |||||| |||||||| ||||| || | ||| |||||||| | |||||||| ||| || ||||| | ||||||||| || |
|
|
| T |
1043215 |
atattcctggcgtgtttggatagccttgagcagtgtctgaaacaccagtagcttcagctatgagaataccacctttaga------ggttctctgagaata |
1043122 |
T |
|
| Q |
411 |
atagaggatagcatgaggttgtggaacattgccataggatctgtttcttgtgagtggtgccaaaacaactctgaaat |
487 |
Q |
| |
|
||| || |||| ||||| ||||||||| || ||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
1043121 |
atacttgacagcaatgggttgaggaacattgttgtatgatctcattcttgttagtggtgccaaaacaactctgaaat |
1043045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 211 - 389
Target Start/End: Complemental strand, 1049409 - 1049231
Alignment:
| Q |
211 |
gaaactcttccaacgtgccaaatctgacagaagaaggtagcacctttggcatggacagcatccacaataggtttccacgcctcgacgtgctctttagtcc |
310 |
Q |
| |
|
||||| |||||| | |||||||| |||||||| || || | ||||| |||| || |||| |||||||||||||||||||| || ||||||||||||| |
|
|
| T |
1049409 |
gaaacccttccagcatgccaaatttgacagaaaaatataccgcctttatcatgaaccgcatttacaataggtttccacgcctcaacatgctctttagtcc |
1049310 |
T |
|
| Q |
311 |
aaatacctggcgtatctggatacccttgagcggtgtcagatataccggtagcttcggttatgagaagacctccgttaga |
389 |
Q |
| |
|
| ||||||||||| | |||||| |||||||| ||||| || | ||| |||||||| | ||||||||| ||||| ||||| |
|
|
| T |
1049309 |
atatacctggcgtgtttggatagccttgagcagtgtctgagacaccagtagcttcagctatgagaaggcctcctttaga |
1049231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 1046009 - 1045897
Alignment:
| Q |
199 |
ataccagtatcagaaactcttccaacgtgccaaatctgacagaagaaggtagcacctttggcatggacagcatccacaataggtttccacgcctcgacgt |
298 |
Q |
| |
|
||||||| || |||||| || ||||| ||||||| ||| |||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||| | |
|
|
| T |
1046009 |
ataccagaattagaaaccctaccaacaagccaaatttgatcgaagaatgtagcacctttggcatgaacagcatccacgataggtttccacgcttcgactt |
1045910 |
T |
|
| Q |
299 |
gctctttagtcca |
311 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
1045909 |
gctcttttgtcca |
1045897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 585 - 645
Target Start/End: Complemental strand, 1045557 - 1045497
Alignment:
| Q |
585 |
atacctatgagctagattgaattttctcattttgtaaggagtgagaagtggaattggatca |
645 |
Q |
| |
|
||||||||||| |||||||||||| | ||| ||||||||||| ||||| ||||| |||||| |
|
|
| T |
1045557 |
atacctatgagatagattgaatttgcccatcttgtaaggagtaagaagaggaatgggatca |
1045497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 586 - 646
Target Start/End: Complemental strand, 1049073 - 1049013
Alignment:
| Q |
586 |
tacctatgagctagattgaattttctcattttgtaaggagtgagaagtggaattggatcag |
646 |
Q |
| |
|
||||||||||||||||||||||| | ||| |||||| | || ||||| ||||||||||||| |
|
|
| T |
1049073 |
tacctatgagctagattgaatttgcccatcttgtaatgtgtaagaagaggaattggatcag |
1049013 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 585 - 645
Target Start/End: Original strand, 1644399 - 1644459
Alignment:
| Q |
585 |
atacctatgagctagattgaattttctcattttgtaaggagtgagaagtggaattggatca |
645 |
Q |
| |
|
||||||||||| |||||| ||||||| ||| ||||||||||| ||||| ||||| |||||| |
|
|
| T |
1644399 |
atacctatgagatagattaaattttcccatcttgtaaggagtaagaagaggaatgggatca |
1644459 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 586 - 640
Target Start/End: Complemental strand, 1042964 - 1042910
Alignment:
| Q |
586 |
tacctatgagctagattgaattttctcattttgtaaggagtgagaagtggaattg |
640 |
Q |
| |
|
||||||||||||||||||||||| | ||| |||||||| || ||||| ||||||| |
|
|
| T |
1042964 |
tacctatgagctagattgaatttacccatcttgtaaggtgtaagaagaggaattg |
1042910 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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