View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4952-Insertion-4 (Length: 91)
Name: NF4952-Insertion-4
Description: NF4952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4952-Insertion-4 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 81; Significance: 1e-38; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 1e-38
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 4364426 - 4364510
Alignment:
| Q |
7 |
acatggcgtatccaaatccgaggcttccacatttaaaccttcaacgtctccattatcatcaatatttagctcagctgaggttctc |
91 |
Q |
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| T |
4364426 |
acatggtgtatccaaatccgaggcttccacatttaaaccttcaacgtctccattatcatcaatatttagctcagctgaggttctc |
4364510 |
T |
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Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-26
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 4368841 - 4368916
Alignment:
| Q |
16 |
atccaaatccgaggcttccacatttaaaccttcaacgtctccattatcatcaatatttagctcagctgaggttctc |
91 |
Q |
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| T |
4368841 |
atccaaatctgagtcgtccacatttaaaccttcaacgtctccattatcatcaatatttagctcagctgacgttctc |
4368916 |
T |
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