View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4952_high_11 (Length: 326)

Name: NF4952_high_11
Description: NF4952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4952_high_11
NF4952_high_11
[»] chr5 (1 HSPs)
chr5 (36-326)||(2273803-2274093)


Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 36 - 326
Target Start/End: Complemental strand, 2274093 - 2273803
Alignment:
Q  36 gttataaatgaaagggattttacggtccatatatgttaggacgtgataataaaacctttctggtacagaagtcataactaacctgcttgattcttcacca 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2274093 gttataaatgaaagggattttacggtccatatatgttaggacgtgataataaaacctttctggtacagaagtcataactaacctgcttgattcttcacca 2273994  T
Q  136 accataagaaaaagcatccatcaaaaatgtcactctctctatttagtatttcctacttattgcagaaaacacagttccttagtattctactcaaacaaag 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2273993 accataagaaaaagcatccatcaaaaatgtcactctctctatttagtattttctacttattgcagaaaacacagtcccttagtattctactcaaacaaag 2273894  T
Q  236 caacattatatatggagaaacagaaactctcacaagaagaaaaggaaaataaattttcagtgtcgtcaaattacagtaacaatactgtgtg 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2273893 caacattatatatggagaaacagaaactctcacaagaagaaaaggaaaataaattttcagtgtcgtcaaattacagtaacaatactgtgtg 2273803  T

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