View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4952_high_13 (Length: 318)

Name: NF4952_high_13
Description: NF4952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4952_high_13
NF4952_high_13
[»] chr4 (1 HSPs)
chr4 (4-318)||(38322685-38322999)


Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-178
Query Start/End: Original strand, 4 - 318
Target Start/End: Original strand, 38322685 - 38322999
Alignment:
Q  4 tcattgtttcttccttccttacccaacccatttactatcatatacccatgtatctctctaccatgcatcaaggctgctagatgagtgcaagccggaagta 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38322685 tcattgtttcttccttccttacccaacccatttactatcatatacccatgtatctctctaccatgcatcaaggctgctagatgagtgcaagccggaagta 38322784  T
Q  104 ctgttgtaactgtaaccaaatcaggctgaaccttattgccaagcatcctatcaaaaagcttcaaagttccgtaatgatcaccacaccgttgatgaactga 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38322785 ctgttgtaactgtaaccaaatcaggctgaaccttattgccaagcatcctatcaaaaagcttcaaagttccgtaatgatcaccacaccgttgatgaactga 38322884  T
Q  204 tatgatcgaattccatgaaaacatatccttctcatccataacctcaaatacattcaaagcatcactagcacatttgcatttcccatacatatcaatcagt 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38322885 tatgatcgaattccatgaaaacatatccttctcatccataacctcaaatacattcaaagcatcactagcacatttgcatttcccatacatatcaatcagt 38322984  T
Q  304 gcattcaaaacaaca 318  Q
    |||||||||||||||    
T  38322985 gcattcaaaacaaca 38322999  T

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