View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4952_high_14 (Length: 318)
Name: NF4952_high_14
Description: NF4952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4952_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 1058520 - 1058235
Alignment:
| Q |
1 |
aaccctgcaatttgcacccccaatgagtatgttacagaattgtaaaatgtcctagtgccctctaaagcaacattgtattatgtatggtacattgaataat |
100 |
Q |
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| T |
1058520 |
aaccctgcaatttgcacccccaatgagtatgttacagaattgtaaaatgtcctagtgccctctaaagcaaaattgtattatg----gtacattgaagaat |
1058425 |
T |
|
| Q |
101 |
tttttaattttggagatatttgtaaagattagtattgttaccagcttcaatagcatttcttgcagcaagtctgaagtcattgacaaggtttggaatttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1058424 |
tttttaattttggagatatttgtaaagattagtattgttaccagcttcaatagcatttcttgcagcaagtctgaagtcattgacaaggtttggaatttca |
1058325 |
T |
|
| Q |
201 |
tctatccttagccgtctgggcggtgtgaattctgcgacatcaataccattacttcgaagttgtggtgtgagtggcttgtctgtaggagat |
290 |
Q |
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| T |
1058324 |
tctatccttagccgtctgggcggtgtgaattctgcgacatcaataccattacttcgaagttgtggtgtgagtggcttgtctgtaggagat |
1058235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 83 - 290
Target Start/End: Complemental strand, 1071245 - 1071038
Alignment:
| Q |
83 |
tatggtacattgaataattttttaattttggagatatttgtaaagattagtattgttaccagcttcaatagcatttcttgcagcaagtctgaagtcattg |
182 |
Q |
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|||| |||||| |||||||| |||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1071245 |
tatgatacattaaataatttattaatttttgagacatttgtaaagattagtaaagttaccagcttcaatagcatttcttgcagcgagtctgaagtcattg |
1071146 |
T |
|
| Q |
183 |
acaaggtttggaatttcatctatccttagccgtctgggcggtgtgaattctgcgacatcaataccattacttcgaagttgtggtgtgagtggcttgtctg |
282 |
Q |
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| T |
1071145 |
acaatgtttggaatttcatctgtccttagccgccttggtggtgtgaattttgcaacatcaataccattacttcgaatttgtggttttagtggcttgtctg |
1071046 |
T |
|
| Q |
283 |
taggagat |
290 |
Q |
| |
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||| |||| |
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| T |
1071045 |
tagaagat |
1071038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 118 - 285
Target Start/End: Complemental strand, 1065471 - 1065304
Alignment:
| Q |
118 |
atttgtaaagattagtattgttaccagcttcaatagcatttcttgcagcaagtctgaagtcattgacaaggtttggaatttcatctatccttagccgtct |
217 |
Q |
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| T |
1065471 |
atttgtaaagattagtaaagttaccagcttcaatagcatttcttgcagcaagtctgaagtcattgacaatgttaggaatttcatctgtccttagccgtct |
1065372 |
T |
|
| Q |
218 |
gggcggtgtgaattctgcgacatcaataccattacttcgaagttgtggtgtgagtggcttgtctgtag |
285 |
Q |
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| T |
1065371 |
aggcggtgtgaattttgcaatattaaaaccattacttcgaatttgtggtgtgagtgacttgtctgtag |
1065304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 290
Target Start/End: Complemental strand, 1046421 - 1046239
Alignment:
| Q |
108 |
ttttggagatatttgtaaagattagtattgttaccagcttcaatagcatttcttgcagcaagtctgaagtcattgacaaggtttggaatttcatctatcc |
207 |
Q |
| |
|
||||||||| ||| |||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||| ||| | |
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| T |
1046421 |
ttttggagagattggtaaagataggtgaagttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaatttcttctgatc |
1046322 |
T |
|
| Q |
208 |
ttagccgtctgggcggtgtgaattctgcgacatcaataccattacttcgaagttgtggtgtgagtggcttgtctgtaggagat |
290 |
Q |
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|||||| || || |||||||||| || | ||||||||||| | || || | ||||||||||| | |||||||||| |||| |
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| T |
1046321 |
ttagcctccttggtggtgtgaattgtgatatttcaataccattgcctccaattcgtggtgtgagtagtttgtctgtagaagat |
1046239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 1033453 - 1033360
Alignment:
| Q |
138 |
ttaccagcttcaatagcatttcttgcagcaagtctgaagtcattgacaaggtttggaatttcatctatccttagccgtctgggcggtgtgaatt |
231 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| |||| || |||||||||||| ||||||||| ||| || |||| ||||| |
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| T |
1033453 |
ttaccagcttcaatagcatttcttgcagcgagtctgaagtcatttacaatattaggaatttcatctgtccttagccttctcggtggtgagaatt |
1033360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 138 - 217
Target Start/End: Complemental strand, 1043845 - 1043766
Alignment:
| Q |
138 |
ttaccagcttcaatagcatttcttgcagcaagtctgaagtcattgacaaggtttggaatttcatctatccttagccgtct |
217 |
Q |
| |
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| T |
1043845 |
ttaccagcttcaatagcatttcttgcagcaagtctgaaatcattgacaatatgaggaatttcatctgtgcttagccgtct |
1043766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 1053051 - 1052976
Alignment:
| Q |
138 |
ttaccagcttcaatagcatttcttgcagcaagtctgaagtcattgacaaggtttggaatttcatctatccttagcc |
213 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||| ||| | ||||||| |
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| T |
1053051 |
ttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaatttcttctgttcttagcc |
1052976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 1641080 - 1641126
Alignment:
| Q |
138 |
ttaccagcttcaatagcatttcttgcagcaagtctgaagtcattgac |
184 |
Q |
| |
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||||||||| | |||||||| |||||||||||||||||||||||||| |
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| T |
1641080 |
ttaccagctgctatagcattccttgcagcaagtctgaagtcattgac |
1641126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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