View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4952_high_16 (Length: 307)
Name: NF4952_high_16
Description: NF4952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4952_high_16 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 38323259 - 38323565
Alignment:
| Q |
1 |
accaaaatttcaaataagtagtaaccaaagcacttccaacaaaaacatccaattccaacccaaatttaaacaacaatccatgaatcttcttaacctcaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38323259 |
accaaaatttcaaataagtagtaaccaaagcacttccaacaaaaacatccaattccaacccaaatttaaacaacaatccatgaatcttcttaacctcaaa |
38323358 |
T |
|
| Q |
101 |
aacatctccagcatcaccacaagctctgatcacacacgggaacgtgaatttatcaggaataacaacacccagaaggcgcatttgcttgtaaagacgaaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38323359 |
aacatctccagcatcaccacaagctctgatcacacacgggaacgtgaatttatcaggaataacaacacccagaaggcgcatttgcttgtaaagaccaaac |
38323458 |
T |
|
| Q |
201 |
gagtgttgagagagtccgtttgcaacgaatccagcaatgattgcattgtaagcgaatacatttttgtcatgatgggttgggtagttgaaaactttgagag |
300 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38323459 |
gagtgttgagagagtccgtttgaaacgaatccagcaatgattgcattgtaagcgaatacatttttgtcatgatgggttgggtagttgaaaactttgagag |
38323558 |
T |
|
| Q |
301 |
catagtt |
307 |
Q |
| |
|
||||||| |
|
|
| T |
38323559 |
catagtt |
38323565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University