View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4952_high_17 (Length: 306)
Name: NF4952_high_17
Description: NF4952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4952_high_17 |
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| [»] chr6 (8 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 12 - 306
Target Start/End: Original strand, 4364137 - 4364431
Alignment:
| Q |
12 |
acagacaatacactacacttaattcaaacccataggtaattcatacacaattcataagtcacaaattacaaacttaagcttgagtattaagcttttaaca |
111 |
Q |
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| T |
4364137 |
acagacagtacactacacttaattcaaacccataggtaattcatacacaattcataagtcacaaattacaaacttaagcttgagtattaagcttttaaca |
4364236 |
T |
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| Q |
112 |
agtggcaagatgcaaacacccaaaacaaggagtcaaatactagatatttaaattagaaagtttttcaaattaaaaacaataatcttccatttaattttca |
211 |
Q |
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| T |
4364237 |
agtggcaagatgcaaacacccaaaacaaggagtcaaatactagatatttaaattagaaagtttttcaaattaaaaacaataatcttccatttaattttca |
4364336 |
T |
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| Q |
212 |
tcttcatatccatcttcatctccgtcttcatcttcgtccccatttacatcatgcaaatcagcaattcccgcatcagctagacacttcagacatgg |
306 |
Q |
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| T |
4364337 |
tcttcatatccatcttcatctccgtcttcatctccgtacccatttacatcatgcaaatcagcaattcccgcatcagctagacacttcagacatgg |
4364431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 4368527 - 4368755
Alignment:
| Q |
13 |
cagacaatacactacacttaattcaaac-ccataggtaattcatacacaattcataagtcacaaattacaaacttaagcttgagtattaagcttttaaca |
111 |
Q |
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|||||||||||||| |||||||||||| ||||||| || |||||||||| | ||||||||||||||| |||||||||| | |||||||||||| ||| |
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| T |
4368527 |
cagacaatacactaaacttaattcaaaatccataggaaagtcatacacaactgataagtcacaaattaacaacttaagctataatattaagcttttcaca |
4368626 |
T |
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| Q |
112 |
agtggcaagatgcaaacacccaaaacaaggagtcaaatactagatatttaaattagaaagtttttcaaattaaaaacaataatcttccatttaattttca |
211 |
Q |
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| T |
4368627 |
agtggtatgatgtaaacacccaaaacaaggagtcaaattctagatctttaatctagaatg-ctttcaaaataaaaac-ataatcttccatttaattttca |
4368724 |
T |
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| Q |
212 |
tcttcatatccatcttcatctccgtcttcat |
242 |
Q |
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| T |
4368725 |
tctccatcttcatcttcatcttcatcttcat |
4368755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 162
Target Start/End: Original strand, 4358788 - 4358913
Alignment:
| Q |
37 |
aaacccataggtaattcatacacaattcataagtcacaaattacaaacttaagcttgagtatt-aagcttttaacaagtggcaagatgcaaacacccaaa |
135 |
Q |
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||||||||||| || || |||||||||||||||||| || | |||| |||||||| |||||| ||||||||| |||||| |||| | ||||||||||| |
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| T |
4358788 |
aaacccataggaaagtcgtacacaattcataagtcagaattaacaa-cttaagctatagtatttaagcttttagcaagtgacaagctctaaacacccaaa |
4358886 |
T |
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| Q |
136 |
acaaggagtcaaatactagatatttaa |
162 |
Q |
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| T |
4358887 |
acaaggagtcaaattctagatatttaa |
4358913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 306
Target Start/End: Original strand, 4358951 - 4359044
Alignment:
| Q |
210 |
catcttcatatccatcttcatctccgtcttcatcttcgtccccatttacatcatgcaaatcagcaattcccgcatcagctagacacttcagacatgg |
306 |
Q |
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||||||||| |||||| ||||||||||||| |||||| || |||| |||||||| ||| ||||| |||||||||||||||||||||||||||| |
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| T |
4358951 |
catcttcatttccatcgtcatctccgtctttatcttcatc---atttttatcatgcatatccgcaatcgccgcatcagctagacacttcagacatgg |
4359044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 4388433 - 4388491
Alignment:
| Q |
56 |
acacaattcataagtcacaaattacaaacttaagcttgagtattaagcttttaacaagt |
114 |
Q |
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| T |
4388433 |
acacaattcataagtcacaaattcataccttaagctatagtattaagcttttaacaagt |
4388491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 294
Target Start/End: Original strand, 4368789 - 4368825
Alignment:
| Q |
258 |
catcatgcaaatcagcaattcccgcatcagctagaca |
294 |
Q |
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| T |
4368789 |
catcatgcaaatcagcaattcccgcatcagcttgaca |
4368825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 4375758 - 4375818
Alignment:
| Q |
56 |
acacaattcataagtcacaaattacaaacttaagc--ttgagtattaagcttttaacaagt |
114 |
Q |
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| T |
4375758 |
acacaattcataagtcacaaattaaaaccttaagctatatagtattaagcttttaaaaagt |
4375818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 5727095 - 5727059
Alignment:
| Q |
56 |
acacaattcataagtcacaaattacaaacttaagctt |
92 |
Q |
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| T |
5727095 |
acacaattcataagtcacaaattataaccttaagctt |
5727059 |
T |
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