View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4952_high_1_N (Length: 639)
Name: NF4952_high_1_N
Description: NF4952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4952_high_1_N |
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Alignment Details
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 142 - 629
Target Start/End: Complemental strand, 38323880 - 38323389
Alignment:
| Q |
142 |
atttcctgtttaagccatatatatacgt----tgatgtcgataataattgatgctctaagaaagcaagcacataaatgaatgggacaacaatctcaagac |
237 |
Q |
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| T |
38323880 |
atttcctgtttaagccatatatatatatatattgatgtcgataataattgatgctctaagaaagcaagcacataaatgaatgggacaacaatctcaagac |
38323781 |
T |
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| Q |
238 |
ttgtcctcccaaaacaacaacagattcgctcgtttcactgttactcagcctcatacgacataggaacatgcattacatcccttcaacaatgtgcacaaac |
337 |
Q |
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| T |
38323780 |
ttgtcctcccaaaacaacaacagattcgctcgtttcactgttactcagcctcatacgacataggaacatgcattacatcccttcaacaatgtgcacaaac |
38323681 |
T |
|
| Q |
338 |
cacaaacctcaccaaaggcaaacaactccacacccatttgctcaaaaatggtttctttgcatccccactcgccatcaccagcatcatcaatatgtactcc |
437 |
Q |
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| T |
38323680 |
cacaaacctcaccaaaggcaaacaactccacacccatttgctcaaaaatggtttctttgcatccccactcgccatcaccagcatcatcaatatgtactcc |
38323581 |
T |
|
| Q |
438 |
aaatgcaccctcatcaactatgctctcaaagttttcaactacccaacccatcatgacaaaaatgtattcgcttacaatgcaatcattgctggattcgttg |
537 |
Q |
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| T |
38323580 |
aaatgcaccctcatcaactatgctctcaaagttttcaactacccaacccatcatgacaaaaatgtattcgcttacaatgcaatcattgctggattcgttt |
38323481 |
T |
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| Q |
538 |
caaacggactctctcaacactcgtttcgtctttacaagcaaatgcgccttctgggtgttgttattcctgataaattcacgttcccgtctgtg |
629 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38323480 |
caaacggactctctcaacactcgtttggtctttacaagcaaatgcgccttctgggtgttgttattcctgataaattcacgttcccgtgtgtg |
38323389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 3 - 141
Target Start/End: Complemental strand, 38324154 - 38324015
Alignment:
| Q |
3 |
aacttgtatagtatcttctattagcattctctaaaaaataatttgtgtgct-tttttgtaaggattgtacatgaagtcaattcaagtacatttttgtaaa |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38324154 |
aacttgtatagtatcttctattagcattctctaaaaaataatttgtgcgttgtttttgtaaggattgtacatgaagtcaattcaagtacatttttgtaaa |
38324055 |
T |
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| Q |
102 |
ctcgcaaaaatccattccatagtgcatgtaaattctgact |
141 |
Q |
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||||||||||||||||||||| ||||| |||||||||||| |
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| T |
38324054 |
ctcgcaaaaatccattccataatgcatataaattctgact |
38324015 |
T |
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