View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4952_high_2 (Length: 592)
Name: NF4952_high_2
Description: NF4952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4952_high_2 |
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| [»] scaffold0008 (6 HSPs) |
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Alignment Details
Target: scaffold0008 (Bit Score: 520; Significance: 0; HSPs: 6)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 33 - 580
Target Start/End: Complemental strand, 69859 - 69312
Alignment:
| Q |
33 |
gacattttccgttgttcaataccacaagggcgtggtgttggacatcacctcctacaaaatgccaatacttttggtaaaataaggctagtaacccatctgg |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
69859 |
gacattttccgttgttcaataccacaagggcgtggtgttggacatcacctcctacaaaatgccaatacttttggtaaaataaggctagtaacccatctgg |
69760 |
T |
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| Q |
133 |
tcctgaggactttaaatggtgcatttgaaaaattacgtcttctacttcttggttagtgaaacgattccctttcactatctcacacacatgtttaattgca |
232 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
69759 |
tcctgaggactttaaatggtgcatttgaaaaattacgtcttctacttcttggttagtgaaacgattccctttcactacctcacacacatgtttaattgca |
69660 |
T |
|
| Q |
233 |
cttggtctgaaagaataacttgtaagaatacgctcaatttgatcatccccccttcttcatatgccctcttaatctttaagtttcttaatttcatttgttg |
332 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
69659 |
cttggtctgaaagaataacttgtaagaatacactcaatttgatcatccccccttctccatatgccctcttaatctttaagtttcttaatttcatttgttg |
69560 |
T |
|
| Q |
333 |
tcttatgctgattttccttgccatgaataaagtttgtattcttatactcatcaataagagaaacctttttgctcctttgttttcatatgatctcacatat |
432 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
69559 |
tcctatgctgattttccttgccatgaataaagtttgtattcttatactcatcaataagagaaacctctttgctcctttgtttccatatgatctcacatat |
69460 |
T |
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| Q |
433 |
tttaggttttcatctagttgtctcttgagattcttgaaccttaaaatatcttcggttgagtttgaccacatagaagtatctatacgaaacttctcaatgt |
532 |
Q |
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| T |
69459 |
tttaggttttcatctagttgtctcttgagattcttgaaccttaaaatatcttcggttgagtttgaccacatagaagtatctatacgaaacttctcaatgt |
69360 |
T |
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| Q |
533 |
tttggttctctttcctcacatttctcatcttatatttgtcgaaagaat |
580 |
Q |
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| T |
69359 |
gttggttctctttcctcacatttctcatcttatatttgtcgaaagaat |
69312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 33 - 580
Target Start/End: Complemental strand, 77702 - 77155
Alignment:
| Q |
33 |
gacattttccgttgttcaataccacaagggcgtggtgttggacatcacctcctacaaaatgccaatacttttggtaaaataaggctagtaacccatctgg |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
77702 |
gacattttccgttgttcaataccacaagggcgtggtgttggacatcacctcctacaaaatgccaatacttttggtaaaataaggctagtaacccatctgg |
77603 |
T |
|
| Q |
133 |
tcctgaggactttaaatggtgcatttgaaaaattacgtcttctacttcttggttagtgaaacgattccctttcactatctcacacacatgtttaattgca |
232 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
77602 |
tcctgaggactttaaatggtgcatttgaaaaattacgtcttctacttcttggttagtgaaacgattccctttcactacctcacacacatgtttaattgca |
77503 |
T |
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| Q |
233 |
cttggtctgaaagaataacttgtaagaatacgctcaatttgatcatccccccttcttcatatgccctcttaatctttaagtttcttaatttcatttgttg |
332 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
77502 |
cttggtctgaaagaataacttgtaagaatacactcaatttgatcatccccccttctccatatgccctcttaatctttaagtttcttaatttcatttgttg |
77403 |
T |
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| Q |
333 |
tcttatgctgattttccttgccatgaataaagtttgtattcttatactcatcaataagagaaacctttttgctcctttgttttcatatgatctcacatat |
432 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
77402 |
tcctatgctgattttccttgccatgaataaagtttgtattcttatactcatcaataagagaaacctctttgctcctttgtttccatatgatctcacatat |
77303 |
T |
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| Q |
433 |
tttaggttttcatctagttgtctcttgagattcttgaaccttaaaatatcttcggttgagtttgaccacatagaagtatctatacgaaacttctcaatgt |
532 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
77302 |
tttaggttttcatctagttgtctcttgagattcttgaaccttaaaatatcttcggttgagtttgaccacatagaagtatctatacgaaacttctcaatgt |
77203 |
T |
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| Q |
533 |
tttggttctctttcctcacatttctcatcttatatttgtcgaaagaat |
580 |
Q |
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| T |
77202 |
gttggttctctttcctcacatttctcatcttatatttgtcgaaagaat |
77155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 36 - 194
Target Start/End: Complemental strand, 70377 - 70219
Alignment:
| Q |
36 |
attttccgttgttcaataccacaagggcgtggtgttggacatcacctcctacaaaatgccaatacttttggtaaaataaggctagtaacccatctggtcc |
135 |
Q |
| |
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|||||| |||||||| |||| |||| || | ||||||||||||||||||||||| ||||||||||||||| ||||||| || | || |||||||| |||| |
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| T |
70377 |
attttctgttgttcagtacctcaagagctttgtgttggacatcacctcctacaatatgccaatacttttgttaaaatacggatggttacccatctagtcc |
70278 |
T |
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| Q |
136 |
tgaggactttaaatggtgcatttgaaaaattacgtcttctacttcttggttagtgaaac |
194 |
Q |
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|| | |||||||| ||||||| || |||||||| | ||||| | ||||||| |||||| |
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| T |
70277 |
tgggaactttaaagggtgcatctggaaaattacttattctaatgattggttattgaaac |
70219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 36 - 194
Target Start/End: Complemental strand, 78220 - 78062
Alignment:
| Q |
36 |
attttccgttgttcaataccacaagggcgtggtgttggacatcacctcctacaaaatgccaatacttttggtaaaataaggctagtaacccatctggtcc |
135 |
Q |
| |
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|||||| |||||||| |||| |||| || | ||||||||||||||||||||||| ||||||||||||||| ||||||| || | || |||||||| |||| |
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| T |
78220 |
attttctgttgttcagtacctcaagagctttgtgttggacatcacctcctacaatatgccaatacttttgttaaaatacggatggttacccatctagtcc |
78121 |
T |
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| Q |
136 |
tgaggactttaaatggtgcatttgaaaaattacgtcttctacttcttggttagtgaaac |
194 |
Q |
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|| | |||||||| ||||||| || |||||||| | ||||| | ||||||| |||||| |
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| T |
78120 |
tgggaactttaaagggtgcatctggaaaattacttattctaatgattggttattgaaac |
78062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 70183 - 70140
Alignment:
| Q |
197 |
ttccctttcactatctcacacacatgtttaattgcacttggtct |
240 |
Q |
| |
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||||||||||||| ||||||||||| || ||||||||||||||| |
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| T |
70183 |
ttccctttcactacctcacacacatcttcaattgcacttggtct |
70140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 78026 - 77983
Alignment:
| Q |
197 |
ttccctttcactatctcacacacatgtttaattgcacttggtct |
240 |
Q |
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||||||||||||| ||||||||||| || ||||||||||||||| |
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| T |
78026 |
ttccctttcactacctcacacacatcttcaattgcacttggtct |
77983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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