View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4952_low_1 (Length: 380)
Name: NF4952_low_1
Description: NF4952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4952_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 38462484 - 38462851
Alignment:
| Q |
1 |
gtggctttaagttaaaagttatgtagtaagagtagtaatatgctacgtgtgggataaaatcatggttatggtattaaatcaaacttagagtttggaatga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38462484 |
gtggctttaagttaaaagttatgtagtaagagtagtaatatgctacgtgtgggataaaatcatggttatggtattaaatcaaacttagagtttggaatga |
38462583 |
T |
|
| Q |
101 |
tgaatacgtaatgagctagaattctatggtctcctttagtaatgcagggctgtgtttaattgccacaatttgttatgttttatcaataaatttcgtttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38462584 |
tgaatacgtaatgagctagaattctatggtctcctttagtaatgcagggctgtgtttaattgccacaatttgttatgttttatcaatatatttcgtttta |
38462683 |
T |
|
| Q |
201 |
ttttggtcatataacatgtttattctattatttgactgttttgtgtactaataatcactatgtttataaagcttgacatagcttaacaaatagattgttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38462684 |
ttttggtcatataacatgtttattctattatttgactgttttgtgtgctaataatcactatgtttataaagcttgacatagcttaacaaatagattgttt |
38462783 |
T |
|
| Q |
301 |
ttgctgtatagctttgttctctgtataaactgtatgtgataattatatatttttagatttttatcttc |
368 |
Q |
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| T |
38462784 |
ttgctgtatagctttgttctctgtataaactgtatgtgataattatatatttctagatttttatcttc |
38462851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 52091490 - 52091123
Alignment:
| Q |
1 |
gtggctttaagttaaaagttatgtagtaagagtagtaatatgctacgtgtgggataaaatcatggttatggtattaaatcaaacttagagtttggaatga |
100 |
Q |
| |
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|||||||||||||||| ||||| || ||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
52091490 |
gtggctttaagttaaa-gttatttattaagagtagtaatatgctatgtgcgggataaaatcatgattatggtattaaatcaaact-----tttggaatgg |
52091397 |
T |
|
| Q |
101 |
tgaa----tacgtaatgagctagaattctatggtctcctttagtaatgcagggctgtgtttaattgccacaatttgttatgttttatcaataaatttcgt |
196 |
Q |
| |
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|||| || |||||||| | ||||| |||| |||||| ||||||||||| | ||||| | |||| ||||||||||| | ||||||||| | ||||| | |
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| T |
52091396 |
tgaataggtaggtaatgagttggaattgtatgctctcctctagtaatgcagtgttgtgtgtcattgacacaatttgttgtattttatcaacatatttctt |
52091297 |
T |
|
| Q |
197 |
tttattttggtcatataacatg-----tttattctattatttgactgttttgtgtactaataatcactatgtttataaagcttgacatagcttaacaaat |
291 |
Q |
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||| |||| ||||||||||||| ||||||||||| ||| | |||| | | | | |||||||||||||||||||||||| ||||||| ||||| |
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| T |
52091296 |
tttgttttagtcatataacatgtttcctttattctattgttttattgttctctatgc---taatcactatgtttataaagcttgcaatagcttttcaaat |
52091200 |
T |
|
| Q |
292 |
agattgtttttgctgtatagctttgttctctgtataaactgtatgtgataattatatatttttagatttttatcttc |
368 |
Q |
| |
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|| ||||||||||||||| ||||||||| |||| ||| | ||| ||||||| ||||||| ||||| ||||||||| |
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| T |
52091199 |
cgaatgtttttgctgtataactttgttctttgtacaaattacatgcgataattttatatttctagatgtttatcttc |
52091123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 48754188 - 48754467
Alignment:
| Q |
1 |
gtggctttaagttaaaagttatgtagtaagagta--gtaatatgctacgtgtgggataaaatcatggttatggtattaaatcaaacttagagtttggaat |
98 |
Q |
| |
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|||||||||||||||| ||||| || ||||||| ||||||||||| |||||||||||||||| | ||||||||||||||||||| |||||||| |
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| T |
48754188 |
gtggctttaagttaaa-gttatttattaagagtgttgtaatatgctatgtgtgggataaaatcaggactatggtattaaatcaaact-----tttggaat |
48754281 |
T |
|
| Q |
99 |
gatgaatacgtaatgagctagaattctatggtctcctttagtaatgcagggctgtgtttaattgccacaatttgttatgttttatcaataaatttcgttt |
198 |
Q |
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| |||||| |||||||| | ||||| |||| |||||||||| ||||||| | | || | |||||||||||||||| ||||||||||| | ||||| ||| |
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| T |
48754282 |
ggtgaataggtaatgagttggaattgtatgctctcctttagcaatgcagtgtcgcgtgtcattgccacaatttgttgtgttttatcaacatatttctttt |
48754381 |
T |
|
| Q |
199 |
tattttggtcatataacatgtttattctattatttgactgttttgtgtactaataatcactatgtttataaagcttgacatagcttaacaa |
289 |
Q |
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|||| | ||||| | | ||||||||||| ||| | |||| | | | | |||||||||||||||||||||||| ||||||||||||| |
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| T |
48754382 |
tattctagtcatgtttc--ctttattctattgttttattgttctctatgc---taatcactatgtttataaagcttgccatagcttaacaa |
48754467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 201 - 317
Target Start/End: Complemental strand, 40733353 - 40733238
Alignment:
| Q |
201 |
ttttggtcatataacatgtttattctattatttgactgttttgtgtactaataatcactatgtttataaagcttgacatagcttaacaaatag--attgt |
298 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||| ||||||| | ||||||||||| ||||| |||||| ||| ||||||||||||| ||| | |
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| T |
40733353 |
ttttggtcatataacatgttttttctatcatttgactggtttgtgtgc---taatcactatgcttatacagcttggcatggcttaacaaatagatatttt |
40733257 |
T |
|
| Q |
299 |
ttttgctgtatagctttgt |
317 |
Q |
| |
|
|| |||||||| ||||||| |
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| T |
40733256 |
ttatgctgtatggctttgt |
40733238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 244
Target Start/End: Original strand, 48753183 - 48753215
Alignment:
| Q |
212 |
taacatgtttattctattatttgactgttttgt |
244 |
Q |
| |
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||||||||||||||||||||||||||| ||||| |
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| T |
48753183 |
taacatgtttattctattatttgactggtttgt |
48753215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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