View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4952_low_2 (Length: 288)
Name: NF4952_low_2
Description: NF4952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4952_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 135 - 273
Target Start/End: Original strand, 38324015 - 38324154
Alignment:
| Q |
135 |
agtcagaatttacatgcactatggaatggatttttgcgagtttacaaaaatgtacttgaattgacttcatgtacaatccttacaaaaa-agcacacaaat |
233 |
Q |
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| T |
38324015 |
agtcagaatttatatgcattatggaatggatttttgcgagtttacaaaaatgtacttgaattgacttcatgtacaatccttacaaaaacaacgcacaaat |
38324114 |
T |
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| Q |
234 |
tattttttagagaatgctaatagaagatactatacaagtt |
273 |
Q |
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| T |
38324115 |
tattttttagagaatgctaatagaagatactatacaagtt |
38324154 |
T |
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Target: chr4; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 38323758 - 38323880
Alignment:
| Q |
16 |
ctgtggttgttttgggaggacaagtcttgagattgttgtcccattcatttatgtgcttgctttcttagagcatcaattattatcgacatca----acgta |
111 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
38323758 |
ctgttgttgttttgggaggacaagtcttgagattgttgtcccattcatttatgtgcttgctttcttagagcatcaattattatcgacatcaatatatata |
38323857 |
T |
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| Q |
112 |
tatatatggcttaaacaggaaat |
134 |
Q |
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| T |
38323858 |
tatatatggcttaaacaggaaat |
38323880 |
T |
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