View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4953-Insertion-1 (Length: 974)
Name: NF4953-Insertion-1
Description: NF4953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4953-Insertion-1 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 828; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 828; E-Value: 0
Query Start/End: Original strand, 7 - 974
Target Start/End: Complemental strand, 28492415 - 28491448
Alignment:
| Q |
7 |
agtaatgtttccatggctagcctttggtcacatgattccatatcttgaactagccaagcttatagcacaaaagggtcacaaagttagctatgtttctacc |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||| |||||| | ||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28492415 |
agtaatgtttccatggctagcctttggtcacatgatcccataccttgaagtggccaaacttatagcacaaaagggtcaccaagttagctatgtttctacc |
28492316 |
T |
|
| Q |
107 |
ccaagaaacatacaacgcctccctcaactaccactaaacgttgctcctctcatcaaatttgttagtcttccaatgccaaaagttgataatcttccagaaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
28492315 |
ccaagaaacatacaacgcctccctcaactaccaccaaacgttgctcctctcatcaaatttgtgagtcttccaatgcctaaagttgataatcttccagaaa |
28492216 |
T |
|
| Q |
207 |
atgcagaggccaccacagatgtttcatgggatgtatttcactaccttaaagatgcatttgacaagctggaacaacctttgaccaattttcttgaatcttc |
306 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28492215 |
atgcagaggccactacagatgtctcatgggatgtatttcaataccttaaagatgcatttgacaagctggaacaacctttgaccaattttcttgaatcttc |
28492116 |
T |
|
| Q |
307 |
tgatgttgattggatcttgcatgattttgctcctttttggctgggtcctgtggcaacaaaatttggtataaaatgtgnnnnnnncaacactactactccg |
406 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||| |||||||||| |
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| T |
28492115 |
tgatgctgattggatcttgcatgattttgctcctttttggttgggtcctgtggcaacaaaaattggtataaaatgtgtttttttcaacattactactccg |
28492016 |
T |
|
| Q |
407 |
ccaaatcttgccttcttaggccccatttcagttcttacgggtaaagagaaaaatcctcgaacaaagctggaggactacacggctccaccaccgtggattc |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28492015 |
ccaaatcttgccttcttaggccccatttcagttcttacgggtaaagagaaagatcctcgaacaaagctggaggactacacggctccaccaccgtggattc |
28491916 |
T |
|
| Q |
507 |
catttaagactacagtggcatacaaatactttgagattaagaagaacgcagaagttttctacaaaaaggactcgggtgtttctgaaatgcatcgtgttag |
606 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||| |
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|
| T |
28491915 |
catttaatactacagtggcatacaaatactttgagattaagaagaacgcggaagttttctccaaaaaggactcaggtgtttctgaaatgcatcgtgttag |
28491816 |
T |
|
| Q |
607 |
ttcttgtgttcagaactgcgacaccattttgattcgtggttgtactgaatttgaacctgagtggtttgaactcctccaaaaccttctcaagaaaccagtt |
706 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28491815 |
ttcttgtgttcaaaactgcgacaccattttgattcgtggttgtactgaatttgaacctgagtggtttgaactcctccaaaaccttctccagaaaccagtt |
28491716 |
T |
|
| Q |
707 |
ctacctgccggtcaactccctagcacagagtttaactttgttgatgaaaatgacacatggcaagggatcaagaattggttagacaaccaacctcatggct |
806 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28491715 |
ctacctgccggtcaactccctagcacagggtttaactttgttgatgaaaatgacacatggcaagggatcaagaagtggttagacaaccaacctcatggct |
28491616 |
T |
|
| Q |
807 |
cagtgggtatatgtggcttttggtagcgaagcaacaccgagtcaagaagaggtcaatgagatagctttaggattggagaagtcgaatcttccattctttt |
906 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28491615 |
cagt-ggtatatgtggcttttggtagcgaagcaacaccgagtcaagaagaagtcaatgagatagctttaggattggagaagtcgaatcttccattctttt |
28491517 |
T |
|
| Q |
907 |
gggtccttagggctcaacatgggcgt-aagacaaggcggtgttacaattgccggaaggatttgaggatc |
974 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28491516 |
gggtccttagggctcaacatgggcgtaaagacaaggcggtgttacaattgccggaaggatttgaggatc |
28491448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 7 - 383
Target Start/End: Complemental strand, 28495734 - 28495358
Alignment:
| Q |
7 |
agtaatgtttccatggctagcctttggtcacatgattccatatcttgaactagccaagcttatagcacaaaagggtcacaaagttagctatgtttctacc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||| |
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|
| T |
28495734 |
agtaatgtttccatggctagcctttggtcacatgattccatatcttgaactagccaagcttatagcacaaaagggtcaccaagtaagttatgtttctaca |
28495635 |
T |
|
| Q |
107 |
ccaagaaacatacaacgcctccctcaactaccactaaacgttgctcctctcatcaaatttgttagtcttccaatgccaaaagttgataatcttccagaaa |
206 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||| || |||||| |||||||||||||||| ||||| |||| |
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|
| T |
28495634 |
ccaagaaacatacaacgcctccctaaactaccaccaaatgttgctcctctcatcaaatttgtgagccttccattgccaaaagttgataaccttcctgaaa |
28495535 |
T |
|
| Q |
207 |
atgcagaggccaccacagatgtttcatgggatgtatttcactaccttaaagatgcatttgacaagctggaacaacctttgaccaattttcttgaatcttc |
306 |
Q |
| |
|
|||||||||| || |||||| || | | || || | | |||| ||| |||| |||||||| || ||||||||||| || |||| ||| ||||||| |
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| T |
28495534 |
atgcagaggctactacagatattccttatgacgttgtaccacacctgaaaaatgcctttgacaaacttgaacaacctttaactcatttccttcaatcttc |
28495435 |
T |
|
| Q |
307 |
tgatgttgattggatcttgcatgattttgctcctttttggctgggtcctgtggcaacaaaatttggtataaaatgtg |
383 |
Q |
| |
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| ||| ||||||||| ||||||||||||| |||||||||| ||||| |||||||| | |||| ||||||||||||| |
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| T |
28495434 |
taatgctgattggattttgcatgattttgttcctttttggttgggttctgtggcaccccaattaggtataaaatgtg |
28495358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 7 - 337
Target Start/End: Complemental strand, 28508277 - 28507947
Alignment:
| Q |
7 |
agtaatgtttccatggctagcctttggtcacatgattccatatcttgaactagccaagcttatagcacaaaagggtcacaaagttagctatgtttctacc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
28508277 |
agtaatgtttccatggctagcctttggtcacatgattccatatcttgaactagccaagcttatagcacaaaagggtcacaaagttagttatgtttctaca |
28508178 |
T |
|
| Q |
107 |
ccaagaaacatacaacgcctccctcaactaccactaaacgttgctcctctcatcaaatttgttagtcttccaatgccaaaagttgataatcttccagaaa |
206 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||| | |||||| |||||||||||||||| ||||| |||| |
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|
| T |
28508177 |
ccaagaaacatacaacgcctccctaaactaccaccaaatgttgctcctctcatcaaatttgtaaaccttccattgccaaaagttgataaccttcctgaaa |
28508078 |
T |
|
| Q |
207 |
atgcagaggccaccacagatgtttcatgggatgtatttcactaccttaaagatgcatttgacaagctggaacaacctttgaccaattttcttgaatcttc |
306 |
Q |
| |
|
| |||||||| || ||||| || | | ||||| | | ||||||||| |||| |||||||| || ||| ||||||| ||| |||| |||||| |||| |
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| T |
28508077 |
acgcagaggctactacagacattccttatgatgtcgtaccataccttaaaaatgcctttgacaaacttgaaaaacctttcacccatttccttgaaacttc |
28507978 |
T |
|
| Q |
307 |
tgatgttgattggatcttgcatgattttgct |
337 |
Q |
| |
|
| ||| || |||||| || |||||||||||| |
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| T |
28507977 |
taatgctggttggatttttcatgattttgct |
28507947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 631 - 972
Target Start/End: Complemental strand, 28507656 - 28507315
Alignment:
| Q |
631 |
cattttgattcgtggttgtactgaatttgaacctgagtggtttgaactcctccaaaaccttctcaagaaaccagttctacctgccggtcaactccctagc |
730 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| || |||||| || | |||||||| ||| | ||||| ||||||| ||||||||||| ||||| | | |
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|
| T |
28507656 |
cattttgatccgtggttgtactgaatttgaacccgaatggtttcaagtgatccaaaacattcaccagaaaacagttctccctgccggtcagctccccaac |
28507557 |
T |
|
| Q |
731 |
acagagtttaactttgttgatgaaaatgacacatggcaagggatcaagaattggttagacaaccaacctcatggctcagtgggtatatgtggcttttggt |
830 |
Q |
| |
|
|| |||||| || | ||||||||||| |||||| |||| ||| | ||||| ||||| ||||| |||||| |||||| ||||||| ||||||||| |
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|
| T |
28507556 |
acggagtttgacagcggccatgaaaatgactcatggccgaggataaaggagtggttggacaagcaaccacatggcacagtgg-tatatgtagcttttggt |
28507458 |
T |
|
| Q |
831 |
agcgaagcaacaccgagtcaagaagaggtcaatgagatagctttaggattggagaagtcgaatcttccattcttttgggtccttagggctcaacatgggc |
930 |
Q |
| |
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|| ||||||| ||| ||||||||||| || ||||||||||||||||| || |||||||| || |||||||||||||||||||||| || || || ||||| |
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|
| T |
28507457 |
agtgaagcaaaaccaagtcaagaagaagtgaatgagatagctttagggttagagaagtcaaaccttccattcttttgggtccttaaggttcgacgtgggc |
28507358 |
T |
|
| Q |
931 |
gta-agacaaggcggtgttacaattgccggaaggatttgagga |
972 |
Q |
| |
|
|| ||| || | ||||| |||||||| |||||||||||||| |
|
|
| T |
28507357 |
ctacagataaagttgtgttgcaattgccagaaggatttgagga |
28507315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 631 - 918
Target Start/End: Complemental strand, 28495110 - 28494824
Alignment:
| Q |
631 |
cattttgattcgtggttgtactgaatttgaacctgagtggtttgaactcctccaaaaccttctcaagaaaccagttctacctgccggtcaactccctagc |
730 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| || | ||||||| ||| ||| ||| |||||| || |||||||| |||| |||| |
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|
| T |
28495110 |
cattttgattcgtggttgtaccgaatttgaacctgagtggtttcaagtgatccaaaatattcacaacaaattagttcttcccgccggtcagctccttagc |
28495011 |
T |
|
| Q |
731 |
acagagtttaactttgttgatgaaaatgacacatggcaagggatcaagaattggttagacaaccaacctcatggctcagtgggtatatgtggcttttggt |
830 |
Q |
| |
|
|| |||||| | | || ||||| |||||||| |||| ||| | ||||||||||| |||| ||||| |||||| ||||||||||||||||| |
|
|
| T |
28495010 |
acggagtttgagggcggcgacgaaaacaacacatggtggtggatgaaggagtggttagacaagaaaccaaatggcacagtgg-tatatgtggcttttggt |
28494912 |
T |
|
| Q |
831 |
agcgaagcaacaccgagtcaagaagaggtcaatgagatagctttaggattggagaagtcgaatcttccattcttttgggtccttaggg |
918 |
Q |
| |
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|| ||||||| ||| ||||||||||| || ||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||| |
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| T |
28494911 |
agtgaagcaaaaccaagtcaagaagaagtgaatgagatagctttagggttggagaagtcaaaccttccattcttttgggtccttaggg |
28494824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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