View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4953-Insertion-2 (Length: 940)
Name: NF4953-Insertion-2
Description: NF4953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4953-Insertion-2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 437; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 208 - 767
Target Start/End: Complemental strand, 5141923 - 5141375
Alignment:
| Q |
208 |
ccttgtgctgtttatgtgaccaacaaaatgaaacaattgatcatctttttagagagtgtgattgggtgaaac-agtgtggtttgcctcaccacactagaa |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5141923 |
ccttgtgctgtttatgtgaccaacaaaatgaaacaattgatcatctttttagagagtgtgattgggtgaaaatagtgtggtttgcctcaccacactagaa |
5141824 |
T |
|
| Q |
307 |
tttgcgaaggatatgttattcttaaatctcacagttgaatctgactcttccaatgtcatagatgctctcaaaaagccttaacatcagagttcctactttg |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5141823 |
tttgcgaaggatatgttattcttaaatctcacagttgaatctgactcttccaatgtcataga-----------agccttaacatcagagttcctactttg |
5141735 |
T |
|
| Q |
407 |
gttctattgttggagattgcaaaagtttcttctctagtttctattatttagagttagtacatgttcgtcgtgaggccaattaagcggcacattatttagc |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5141734 |
gttctattgttggagattgcaaaagtttcttctctagtttctattatttagagttagtacatgttcgtcgtgaggccaattaagcggcacattatttagc |
5141635 |
T |
|
| Q |
507 |
aaagtttgccatttcttctctaactgattttgtttggattgaagaaactcctaagtgtatttcttctgtagtggcacttgatgtgttaccattgtttgat |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5141634 |
aaagtttgccatttcttctctaactgattttgtttggattgaagaaactcttaagtgtatttcttctgtagtggcacttgatgtgttaccattgtttgat |
5141535 |
T |
|
| Q |
607 |
taataaaatcagttatttcaacnnnnnnnngtatacaaaattttgattagatacatgtgtaaaaacgatttacactatcggtacatagatatttatctca |
706 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5141534 |
taataaaatcagttatttcaacaaaaaaaa-tatacaaaattttgattagatatatgtgtaaaaacgatttacactatcggtacatagatatttatctca |
5141436 |
T |
|
| Q |
707 |
ttttnnnnnnnnnntgttattgtttgattcttaataaattattttacaattatattaacat |
767 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5141435 |
ttttaaaaaaaaaatgttatcgtttgattcttaataaattattttacaattatattaacat |
5141375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 209
Target Start/End: Complemental strand, 5142167 - 5141965
Alignment:
| Q |
7 |
ataagtttgattcacactaccttgactgactccattttcacggtaaagtcaacatatagattcttaaagagaagaaatgcagctttaaactcaaaccaat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5142167 |
ataagtttgattcacactaccttgactgactccattttcacggtaaagtcaacatatagattcttaaagagaagaaatgcagctttaaactcaaaccaat |
5142068 |
T |
|
| Q |
107 |
ttgtcatcccgcaagcaagtaatgcctggttaaagctttggaaggtaaaaactattccgagacatgtgcatctgttatggagaaatctgcatagtcatct |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5142067 |
ttgtcatcccgcaagcaagtaatgcctggttaaagctttggaaggtaaaacctattccgagacatgtgcatctgttatggagaaatctgcatagtcatct |
5141968 |
T |
|
| Q |
207 |
tcc |
209 |
Q |
| |
|
||| |
|
|
| T |
5141967 |
tcc |
5141965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 764 - 876
Target Start/End: Complemental strand, 5141351 - 5141238
Alignment:
| Q |
764 |
acatccaaacaccttaatttacatatgcatccacttgtggcattcgagatcagagcttttacgatgagacatacaactctc-aaggtgcgtcaggcaaag |
862 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| |
|
|
| T |
5141351 |
acatccaaacaccttaatttacatatgcattcacttgtggcattcgagatcagagcttttacgatgagatatacaactctcaaaggtgcgccaggcaaag |
5141252 |
T |
|
| Q |
863 |
tatagccaaagatg |
876 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
5141251 |
tatagccaaagatg |
5141238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 766 - 825
Target Start/End: Original strand, 5167979 - 5168038
Alignment:
| Q |
766 |
atccaaacaccttaatttacatatgcatccacttgtggcattcgagatcagagcttttac |
825 |
Q |
| |
|
|||||||||| | |||||||||||||||| || ||||| ||||| |||| |||||||||| |
|
|
| T |
5167979 |
atccaaacacttcaatttacatatgcatctacatgtgggattcgggatcggagcttttac |
5168038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 895 - 932
Target Start/End: Original strand, 7200570 - 7200606
Alignment:
| Q |
895 |
atcaacatgttttatatcatttgtgtttgacacttttg |
932 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7200570 |
atcaacatgtttt-tatcatttgtgtttgacacttttg |
7200606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 301 - 402
Target Start/End: Original strand, 29161012 - 29161113
Alignment:
| Q |
301 |
ctagaatttgcgaaggatatgttattcttaaatctcacagttgaatctgactcttccaatgtcatagatgctctcaaaaagccttaacatcagagttcct |
400 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||| ||||||||||||||| | ||||||||||||||| ||||||||| |||||||||| |||| |
|
|
| T |
29161012 |
ctagaatttgcgaaagatatgttattcctaaatctcacatctgaatctgactcttctattgtcatagatgctctaaaaaagcctcaacatcagagatcct |
29161111 |
T |
|
| Q |
401 |
ac |
402 |
Q |
| |
|
|| |
|
|
| T |
29161112 |
ac |
29161113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 449 - 548
Target Start/End: Original strand, 29161186 - 29161283
Alignment:
| Q |
449 |
attatttagagttagtacatgttcgtcgtgaggccaattaagcggcacattatttagcaaagtttgccatttcttctctaactgattttgtttggattga |
548 |
Q |
| |
|
||||||||||||||||||| |||||||||| | ||| |||||||| ||||||||| |||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
29161186 |
attatttagagttagtacac--tcgtcgtgagactaatcaagcggcatattatttagtaaagtttgtcatttcttctctaactggttttgtttggattga |
29161283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 7e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 77 - 182
Target Start/End: Original strand, 27519784 - 27519889
Alignment:
| Q |
77 |
gaagaaatgcagctttaaactcaaaccaatttgtcatcccgcaagcaagtaatgcctggttaaagctttggaaggtaaaaactattccgagacatgtgca |
176 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||| |||||| ||||||| ||||||||| ||||| ||| |||||||||||| | ||||||||| |
|
|
| T |
27519784 |
gaagaaatgcatatttaaactccaaccaatttgtcatcctgcaagcgagtaatgtctggttaaaactttgaaagataaaaactattctaaaacatgtgca |
27519883 |
T |
|
| Q |
177 |
tctgtt |
182 |
Q |
| |
|
|||||| |
|
|
| T |
27519884 |
tctgtt |
27519889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 496 - 627
Target Start/End: Original strand, 42797349 - 42797481
Alignment:
| Q |
496 |
cattatttagcaaagtttgccatttcttctctaactgattttgtttggattgaagaaactcctaagtgtatttcttctgtagtggcacttgatgtgttac |
595 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||| ||||| | ||||| ||||| | |||| | |||||| |||||||| |||||||| | || | |
|
|
| T |
42797349 |
cattatttagcaaagtttgctatttattctctaacttattttttatggatggaagagattcctcattgtattgtagctgtagtgacacttgatttattgc |
42797448 |
T |
|
| Q |
596 |
cat-tgtttgattaataaaatcagttatttcaa |
627 |
Q |
| |
|
||| | |||| |||||| ||| ||||||||||| |
|
|
| T |
42797449 |
catctttttggttaatacaattagttatttcaa |
42797481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 895 - 932
Target Start/End: Complemental strand, 24720008 - 24719970
Alignment:
| Q |
895 |
atcaacatgtttt-atatcatttgtgtttgacacttttg |
932 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24720008 |
atcaacatgtttttatatcatttgtgtttgacacttttg |
24719970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 493 - 558
Target Start/End: Complemental strand, 16533643 - 16533578
Alignment:
| Q |
493 |
gcacattatttagcaaagtttgccatttcttctctaactgattttgtttggattgaagaaactcct |
558 |
Q |
| |
|
|||||||||||||| || ||||| |||||||| | ||||||||||||||||||||| |||||| |
|
|
| T |
16533643 |
gcacattatttagccaaatttgcaatttcttcgtaatatgattttgtttggattgaagagactcct |
16533578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University