View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4953-Insertion-3 (Length: 904)
Name: NF4953-Insertion-3
Description: NF4953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4953-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 8 - 364
Target Start/End: Complemental strand, 33964655 - 33964300
Alignment:
| Q |
8 |
ggtttgttttttggaccggtcttccatgctacggatagaacggcctctcttgtgatgaggtcacccgatttggttgtaggatcatcatcagacgaggagg |
107 |
Q |
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| T |
33964655 |
ggtttgtgttttggaccggtcttccatgctacggatagaacggcttctcttgtgatgaggtcacccgatttggttgtaggatcatcatcagacgaggagg |
33964556 |
T |
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| Q |
108 |
aatggaacattggtaactagatctagttcttatcattttcttaggccttggatagctatatagtaggatggtacaccttctatgctcttagaaattaagg |
207 |
Q |
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| T |
33964555 |
aatggaacactggtaactaggtctagttcttgtcattttcttaggccttggatagctatatagtaggatggtacaccttctatgctcttagaaagtaagg |
33964456 |
T |
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| Q |
208 |
aatgggnnnnnnnttgagcaaagatcttgtaacgcttacctaaattttttgaagcataattatcttgaagtccatttgtcgtagttagggttcttatagt |
307 |
Q |
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| T |
33964455 |
aatgggaaaaaaattgagcaaagatcttgtaacgcttacctaaaatttttgaagcataa-tatcttgaagtccatttgtcgtagttagggttcttatagt |
33964357 |
T |
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| Q |
308 |
gtttgaaggttgtattccaaatttcatgatattgaaaagtccattggtatgttattc |
364 |
Q |
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| T |
33964356 |
gtttgaaggttgtattccaaatttcatgatattgaaaagtccattggtatggtattc |
33964300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 637 - 904
Target Start/End: Complemental strand, 33963984 - 33963719
Alignment:
| Q |
637 |
acgtgtgactccggaacacgataaccttcttacaagtga---attccaagctaatgaatttcgacaggccttgtttagcatgcatgcagatacagcttca |
733 |
Q |
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| T |
33963984 |
acgtgcgactccggaacacaataaccttcttacaagtgatcaattccaagctaatgaatttcgacaggccttgtttagcat--------atacagcttca |
33963893 |
T |
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| Q |
734 |
ggctccgacaaattaattggatcaagcaacactgcattt-gaatgaaactaacatagtgttgatactgaaggttagaatctgacatctatgaaggattta |
832 |
Q |
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| T |
33963892 |
ggccccgacaaattaattggatcaagcaacactgcattttgaatgaaaccaacatagttttgatactgaaggttagaatctgacatctatgaaggattta |
33963793 |
T |
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| Q |
833 |
agaccaatatccctgtgc-aaaacatgtccataccctttcctta-tttattgttagatccaattgtagggaagt |
904 |
Q |
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| T |
33963792 |
agaccaatatccctgtgcaaaaacatgtccataccctttccttattttattgttagatccaattgtagggaagt |
33963719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 397 - 536
Target Start/End: Complemental strand, 33964124 - 33963985
Alignment:
| Q |
397 |
atattcaaatgaatcatgtgatacaaatcaaagaaaacaaacagacaatatgatgaacacaaaaaggctagtcctaaacaagaattgtcttatatctgaa |
496 |
Q |
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| T |
33964124 |
atattcaaatgaatcatgtgatgcaaatcaaagaaaacaaacagacaatatgatgaacacaaaaaggctagtcctaaacaagaattgtcttatatctgat |
33964025 |
T |
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| Q |
497 |
ttatttttcctgatttgattagcctctatgttcttatata |
536 |
Q |
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| T |
33964024 |
ttatttttccttatttgattagcctctatgttcttatata |
33963985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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