View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4953_high_1 (Length: 527)
Name: NF4953_high_1
Description: NF4953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4953_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 15 - 357
Target Start/End: Original strand, 8807347 - 8807689
Alignment:
| Q |
15 |
accaacaacattatcaactgatacaccaaagtagtttcttccatcaaaactcctctcaccaaatgaattcaaatcgttgtactgtcgacacgatgaggtt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8807347 |
accaacaacattatcaactgatacaccaaagtagtttcttccatcaaaactcctctcaccaaatgaattcaaatcgttgtactgtcgacacgatgaggtt |
8807446 |
T |
|
| Q |
115 |
cctggaaagtctactaacaaaccatctgaaaagaattccaaaatgggatagttttgtgaacctattttgatcaaaagggtggatgaatttgagcaagaga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8807447 |
cctggaaagtctactaacaaaccatctgaaaagaattccaaaatgggatagttttgtgaacctattttgatcaaaagggtggatgaatttgagcaagaga |
8807546 |
T |
|
| Q |
215 |
ggtggaaagaacttgacaatgaagcacatgaagtgttgttgatgtagaatggaaatggaacatggagttttccacatgtttcattgcatgaattttttgg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8807547 |
ggtggaaagaacttgacaatgaagcacatgaagtgttgttgatgtagaatggaaatggaacatggagttttccacatgtttcattgcatgaattttttgg |
8807646 |
T |
|
| Q |
315 |
aagcataggtggttcaactagttttgtttgcacttgttggagg |
357 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8807647 |
aagcaaaggtggttcaactagttttgtttgcacttgttggagg |
8807689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 411 - 516
Target Start/End: Original strand, 8807743 - 8807848
Alignment:
| Q |
411 |
tttcatgaggacaacaacattaaacattgctagtagcagtggcagtgacagtgctagtgaaagaacttgttgagtttaggtgttaaagaaaaaacaatgc |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8807743 |
tttcatgaggacaacaacattaaacattgctagtagcagtggcagggacagtgctagtgaaagaacttgttgagtttaggtgttaaagaaaaaacaatgc |
8807842 |
T |
|
| Q |
511 |
gttcat |
516 |
Q |
| |
|
|||||| |
|
|
| T |
8807843 |
gttcat |
8807848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 56 - 204
Target Start/End: Original strand, 22923789 - 22923937
Alignment:
| Q |
56 |
catcaaaactcctctcaccaaatgaattcaaatcgttgtactgtcgacacgatgaggt-tcctggaaagtctactaacaaaccatctgaaaagaattcca |
154 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||| ||||||| || || || |||| ||||||||||||||||| |||| | ||||||| || |
|
|
| T |
22923789 |
catcaaaactcctctcttcaaataaattcaaatcgttgtatcgtcgacatgacgatgtatccta-aaagtctactaacaaacaatctaagaagaatttca |
22923887 |
T |
|
| Q |
155 |
aaatgggatagttttgtgaacctattttgatcaaaagggtggatgaattt |
204 |
Q |
| |
|
| || ||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
22923888 |
agataagatagttttgtgaacctattttgttcaaaagggtagatgaattt |
22923937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University