View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4953_high_5 (Length: 257)
Name: NF4953_high_5
Description: NF4953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4953_high_5 |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 14 - 237
Target Start/End: Original strand, 19327140 - 19327355
Alignment:
| Q |
14 |
agagggaagaatgatattatgttgatgaaacttgctaaggaaaagcagtggaaacgttgtccgaattgtaagtactatgtcgctaagtccgagggttgct |
113 |
Q |
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| T |
19327140 |
agagggaagaatgatattatgttgatgaaacttgctaaggaaaagcagtggaaaaggtgtccgaattgtaagtattatgttgctaagtccgagggttgct |
19327239 |
T |
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| Q |
114 |
tgtacatgaaatgcaggtacttgtcttccatt-ctagtactcttgctactgttattattgatatttacgtgttagttat-atggttttgtgttatacttg |
211 |
Q |
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| T |
19327240 |
tgtacatgaaatgcaggtacttgtctttcattactagt-------ctacagttattatcgatatctacgtgttagttataagggttttgtgttatac--- |
19327329 |
T |
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| Q |
212 |
ttgtattatactgtatgtgtgtttgt |
237 |
Q |
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| T |
19327330 |
ttgtattatactgtatgtgtgtttgt |
19327355 |
T |
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Target: scaffold0008 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 6646 - 6735
Alignment:
| Q |
24 |
atgatattatgttgatgaaacttgctaaggaaaagcagtggaaacgttgtccgaattgtaagtactatgtcgctaagtccgagggttgct |
113 |
Q |
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| T |
6646 |
atgatgttatgttgaagaaacatgctaaggatcagaagtggagacggtgtccgaattgtaggttttatgtcgctaagtccgagggttgct |
6735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 25365067 - 25364978
Alignment:
| Q |
24 |
atgatattatgttgatgaaacttgctaaggaaaagcagtggaaacgttgtccgaattgtaagtactatgtcgctaagtccgagggttgct |
113 |
Q |
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||||| ||||||||||||||| ||||||||| || |||||| || ||||| ||||||| || |||||||||| ||| |||||||||| |
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| T |
25365067 |
atgatgttatgttgatgaaacatgctaaggatcagaagtggagacagtgtccaaattgtaggttttatgtcgctaggtcggagggttgct |
25364978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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