View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4953_low_2 (Length: 416)
Name: NF4953_low_2
Description: NF4953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4953_low_2 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 7 - 397
Target Start/End: Complemental strand, 45271456 - 45271066
Alignment:
| Q |
7 |
gtgagatgaagatcaaggagcaattccatgttcagagtttgtacagcgtacaaaaggtcaccgccgttgcccttgacattgtgactggtttgtctgacat |
106 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45271456 |
gtgagaagaagatcaaggagcaattccatgttcagagtttgtacagcgtacaaaaggtcacagccgttgcccttgacattgtgactggtttgtctgacat |
45271357 |
T |
|
| Q |
107 |
cctccagcaattcaacttgaactttgatatcaaacctccttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggatacccttcatggatc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45271356 |
cctccagcaattcaacttgaactttgatatcaaacctccttcccgtcgtcttcttaattctgaggtgactgttgacgatcaaggatacccttcatggatc |
45271257 |
T |
|
| Q |
207 |
tcttcttctggtcgcaagcttttggctaaaatgcaacgaaaaaattggagagcaaatattaggcctaatgctgttgttgccaatgatggtagcggccaat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45271256 |
tcttcttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagcaaatattaggcctaatgctgttgttgccaatgatggtagcggccaat |
45271157 |
T |
|
| Q |
307 |
ttaaaacaatccaggctgctcttgcctcttatcctaagggaaacaaaggcaggtattttatctacgttaaggctggtgtctatgacgaata |
397 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||||| ||| ||| |||||||||||||||| ||||||||||||||||| |
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| T |
45271156 |
ttaaaaccatccaggctgctcttgcctcttaccctaagggaaacaaagacagatatgttatctacgttaaggccggtgtctatgacgaata |
45271066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 7 - 397
Target Start/End: Complemental strand, 45274989 - 45274599
Alignment:
| Q |
7 |
gtgagatgaagatcaaggagcaattccatgttcagagtttgtacagcgtacaaaaggtcaccgccgttgcccttgacattgtgactggtttgtctgacat |
106 |
Q |
| |
|
|||||| ||| ||||| |||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
45274989 |
gtgagaagaaaatcaaagagcaattccatgttcagagtttggacagcgtacaaaagatcaccgcggttgcccttgacattgtgactggtttgtccgacat |
45274890 |
T |
|
| Q |
107 |
cctccagcaattcaacttgaactttgatatcaaacctccttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggatacccttcatggatc |
206 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45274889 |
cctccagcaattcaacttgaagtttgatatcaaacctctttcccgtcgtcttcttaattctgaggtgactgttgacgatcaaggatacccttcatggatc |
45274790 |
T |
|
| Q |
207 |
tcttcttctggtcgcaagcttttggctaaaatgcaacgaaaaaattggagagcaaatattaggcctaatgctgttgttgccaatgatggtagcggccaat |
306 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45274789 |
tctgcttctgatcgcaagcttttggctaaaatgcaacgaaaaaattggagagcaaatattaggcctaatgctgttgttgccaatgatggtagcggccaat |
45274690 |
T |
|
| Q |
307 |
ttaaaacaatccaggctgctcttgcctcttatcctaagggaaacaaaggcaggtattttatctacgttaaggctggtgtctatgacgaata |
397 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45274689 |
ttaaaaccatccaggctgctcttgcctcttatcctaagggaaacaaaggcaggtattttatctacgttaaggctggtgtctatgacgaata |
45274599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 7 - 397
Target Start/End: Complemental strand, 45283230 - 45282840
Alignment:
| Q |
7 |
gtgagatgaagatcaaggagcaattccatgttcagagtttgtacagcgtacaaaaggtcaccgccgttgcccttgacattgtgactggtttgtctgacat |
106 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| |
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|
| T |
45283230 |
gtgagaagaagatcaaggagcaattccatgttcagagtttggacagcgtacaaaaggttaccgctgttgcccttgacattgtgactggtttgtccgacat |
45283131 |
T |
|
| Q |
107 |
cctccagcaattcaacttgaactttgatatcaaacctccttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggatacccttcatggatc |
206 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45283130 |
cctccagcaattcaacttgaagtttgatgtcaaacctgcttcccgtcgtcttcttaattctgaggtgactgttgacgatcaaggatacccttcatggatc |
45283031 |
T |
|
| Q |
207 |
tcttcttctggtcgcaagcttttggctaaaatgcaacgaaaaaattggagagcaaatattaggcctaatgctgttgttgccaatgatggtagcggccaat |
306 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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|
| T |
45283030 |
tcttcttctgatcgcaagcttttggctaaaatgcaacgaaaaaattggagagcaaatattatgcctaatgctgttgttgccaaggatggtagcggccaat |
45282931 |
T |
|
| Q |
307 |
ttaaaacaatccaggctgctcttgcctcttatcctaagggaaacaaaggcaggtattttatctacgttaaggctggtgtctatgacgaata |
397 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||| |
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|
| T |
45282930 |
ttaaaaccatccaggctgctcttgcctcttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgtctatgacgaata |
45282840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 7 - 397
Target Start/End: Complemental strand, 45294618 - 45294228
Alignment:
| Q |
7 |
gtgagatgaagatcaaggagcaattccatgttcagagtttgtacagcgtacaaaaggtcaccgccgttgcccttgacattgtgactggtttgtctgacat |
106 |
Q |
| |
|
|||||| |||||||||||||||||| | |||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| |
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|
| T |
45294618 |
gtgagaagaagatcaaggagcaattagacgttcagagtttggacagcgtacaaaaggttaccgctgttgcccttgacattgtgactggtttgtccgacat |
45294519 |
T |
|
| Q |
107 |
cctccagcaattcaacttgaactttgatatcaaacctccttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggatacccttcatggatc |
206 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45294518 |
cctccagcaattcaacttgaagtttgatatcaaacctgcttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggatacccttcatggatc |
45294419 |
T |
|
| Q |
207 |
tcttcttctggtcgcaagcttttggctaaaatgcaacgaaaaaattggagagcaaatattaggcctaatgctgttgttgccaatgatggtagcggccaat |
306 |
Q |
| |
|
||| |||||| |||||||||||||||||||||| || |||| |||||||||||| || || ||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
45294418 |
tctgcttctgatcgcaagcttttggctaaaatgaaaggaaacggatggagagcaaatgttggggctaatgctgttgttgccaaggatggtagcggtcaat |
45294319 |
T |
|
| Q |
307 |
ttaaaacaatccaggctgctcttgcctcttatcctaagggaaacaaaggcaggtattttatctacgttaaggctggtgtctatgacgaata |
397 |
Q |
| |
|
||||||| |||||||||||| ||||| |||| |||||||| ||||||||||| ||| |||||||||||||||||| |||||||| ||||| |
|
|
| T |
45294318 |
ttaaaaccatccaggctgctattgccgcttaccctaaggggaacaaaggcagatatactatctacgttaaggctggcgtctatgatgaata |
45294228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 7 - 397
Target Start/End: Complemental strand, 45303578 - 45303188
Alignment:
| Q |
7 |
gtgagatgaagatcaaggagcaattccatgttcagagtttgtacagcgtacaaaaggtcaccgccgttgcccttgacattgtgactggtttgtctgacat |
106 |
Q |
| |
|
|||||| |||||||||||||||||| | |||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45303578 |
gtgagaagaagatcaaggagcaattagacgttcagagtttggacagcgtacaaaaggttaccgctgttgcccttgacattgtgactggtttgtccgacat |
45303479 |
T |
|
| Q |
107 |
cctccagcaattcaacttgaactttgatatcaaacctccttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggatacccttcatggatc |
206 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45303478 |
cctccagcaattcaacttgaagtttgatatcaaacctgcttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggatacccttcatggatc |
45303379 |
T |
|
| Q |
207 |
tcttcttctggtcgcaagcttttggctaaaatgcaacgaaaaaattggagagcaaatattaggcctaatgctgttgttgccaatgatggtagcggccaat |
306 |
Q |
| |
|
||| |||||| |||||||||||||||||||||| || |||| |||||||||||| || || ||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
45303378 |
tctgcttctgatcgcaagcttttggctaaaatgaaaggaaacggatggagagcaaatgttggggctaatgctgttgttgccaaggatggtagcggtcaat |
45303279 |
T |
|
| Q |
307 |
ttaaaacaatccaggctgctcttgcctcttatcctaagggaaacaaaggcaggtattttatctacgttaaggctggtgtctatgacgaata |
397 |
Q |
| |
|
||||||| |||||||||||| ||||| |||| |||||||| ||||||||||| ||| |||||||||||||||||| |||||||| ||||| |
|
|
| T |
45303278 |
ttaaaaccatccaggctgctattgccgcttaccctaaggggaacaaaggcagatatactatctacgttaaggctggcgtctatgatgaata |
45303188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 394
Target Start/End: Complemental strand, 38588302 - 38588240
Alignment:
| Q |
332 |
ctcttatcctaagggaaacaaaggcaggtattttatctacgttaaggctggtgtctatgacga |
394 |
Q |
| |
|
|||||||||||||||| ||||||||| || ||||||| || |||||||| ||||||||||| |
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|
| T |
38588302 |
ctcttatcctaagggattcaaaggcagatacattatctatgtcaaggctggggtctatgacga |
38588240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 398
Target Start/End: Complemental strand, 38583275 - 38583243
Alignment:
| Q |
366 |
atctacgttaaggctggtgtctatgacgaatat |
398 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
38583275 |
atctacgtcaaggctggtgtctatgacgaatat |
38583243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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