View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4953_low_3 (Length: 333)
Name: NF4953_low_3
Description: NF4953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4953_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 16559804 - 16559662
Alignment:
| Q |
16 |
atggtggagaaggaaaatagtactactgtcgatatgaagttgaacatgaaataaatatgaaaacaaattgttgcgagggaaacaagtctataaataaatt |
115 |
Q |
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| T |
16559804 |
atggtggagaaggaaaatagtactactgtcgatatgaagttgaacatgaaataaatatgaaaacaaattgttgcgagggaaacaagtctataaataaatt |
16559705 |
T |
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| Q |
116 |
tattgcatcggtttgaaaagtaatgaatgtaaaaagtgagctg |
158 |
Q |
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| T |
16559704 |
tattgcatcggtttgagaagtaatgaatgtaaaaagtgagctg |
16559662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 221 - 315
Target Start/End: Complemental strand, 16559598 - 16559504
Alignment:
| Q |
221 |
ctgcatcaattaacaaaacaatcatccaatagtgagagctctatttaatttcaaaagcaacaccattttttgaaagaaaaggttgtcatttatag |
315 |
Q |
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| T |
16559598 |
ctgcatcaattaacaaaacaatcatccaatagtgagagttctatttaatttcaaaagcaacaccattttttgaaagaaaaggttgtcatttatag |
16559504 |
T |
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