View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4953_low_4 (Length: 311)

Name: NF4953_low_4
Description: NF4953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4953_low_4
NF4953_low_4
[»] chr6 (15 HSPs)
chr6 (107-294)||(31109508-31109678)
chr6 (19-99)||(31109245-31109325)
chr6 (15-99)||(9698352-9698436)
chr6 (15-99)||(21279926-21280010)
chr6 (15-96)||(13743240-13743321)
chr6 (15-96)||(13748740-13748821)
chr6 (18-99)||(21293699-21293780)
chr6 (15-96)||(30014343-30014424)
chr6 (18-97)||(3213399-3213478)
chr6 (15-96)||(33253913-33253994)
chr6 (15-94)||(27441544-27441623)
chr6 (15-97)||(7292746-7292828)
chr6 (15-97)||(7367548-7367630)
chr6 (15-97)||(26670028-26670110)
chr6 (15-97)||(33242402-33242484)
[»] chr4 (23 HSPs)
chr4 (15-96)||(55272395-55272476)
chr4 (15-97)||(28988472-28988554)
chr4 (15-98)||(32728355-32728438)
chr4 (15-97)||(711959-712041)
chr4 (16-97)||(960890-960971)
chr4 (15-96)||(17619171-17619252)
chr4 (15-94)||(35037007-35037086)
chr4 (15-97)||(1771285-1771367)
chr4 (15-97)||(27864563-27864645)
chr4 (15-97)||(55966365-55966447)
chr4 (15-94)||(3756265-3756344)
chr4 (15-94)||(27893861-27893940)
chr4 (15-94)||(38851515-38851594)
chr4 (42-97)||(46827752-46827807)
chr4 (15-98)||(48463469-48463552)
chr4 (16-98)||(49229684-49229766)
chr4 (16-96)||(27550309-27550389)
chr4 (15-95)||(41878407-41878487)
chr4 (15-99)||(48435598-48435682)
chr4 (15-94)||(43735744-43735823)
chr4 (15-97)||(33703140-33703222)
chr4 (15-96)||(35017733-35017813)
chr4 (16-96)||(12496956-12497036)
[»] chr5 (12 HSPs)
chr5 (15-97)||(7617132-7617214)
chr5 (18-97)||(38470578-38470657)
chr5 (15-99)||(17208071-17208155)
chr5 (15-96)||(2614668-2614749)
chr5 (15-96)||(22512305-22512386)
chr5 (15-96)||(32473413-32473494)
chr5 (15-96)||(41334682-41334763)
chr5 (15-94)||(5256997-5257076)
chr5 (15-97)||(18033981-18034063)
chr5 (63-97)||(30622785-30622819)
chr5 (15-97)||(33801468-33801550)
chr5 (44-96)||(33855091-33855143)
[»] chr1 (20 HSPs)
chr1 (15-98)||(45705823-45705906)
chr1 (15-96)||(48119628-48119709)
chr1 (15-97)||(44112676-44112758)
chr1 (15-97)||(45639751-45639833)
chr1 (15-96)||(35003294-35003375)
chr1 (15-96)||(46168383-46168464)
chr1 (15-99)||(750324-750408)
chr1 (15-97)||(5489775-5489857)
chr1 (15-97)||(26585461-26585543)
chr1 (15-96)||(38335918-38335999)
chr1 (15-98)||(38113214-38113297)
chr1 (15-98)||(41065151-41065234)
chr1 (18-96)||(37814778-37814856)
chr1 (15-96)||(43571105-43571186)
chr1 (15-99)||(45427764-45427848)
chr1 (15-94)||(2497581-2497660)
chr1 (15-94)||(7447828-7447906)
chr1 (42-97)||(14427346-14427401)
chr1 (15-97)||(48498981-48499063)
chr1 (15-96)||(35000132-35000213)
[»] chr8 (16 HSPs)
chr8 (15-97)||(34304787-34304869)
chr8 (15-98)||(18066737-18066820)
chr8 (15-97)||(35181515-35181597)
chr8 (15-94)||(26125637-26125716)
chr8 (15-97)||(36743502-36743584)
chr8 (15-96)||(11582766-11582847)
chr8 (15-96)||(29705362-29705443)
chr8 (15-99)||(16603645-16603729)
chr8 (15-99)||(29800969-29801053)
chr8 (16-97)||(30660762-30660843)
chr8 (15-99)||(20148757-20148841)
chr8 (15-99)||(31384661-31384745)
chr8 (15-97)||(5754902-5754984)
chr8 (63-97)||(19386637-19386671)
chr8 (15-95)||(16358852-16358933)
chr8 (15-99)||(2546993-2547077)
[»] chr7 (20 HSPs)
chr7 (15-97)||(40236918-40237000)
chr7 (18-95)||(31408655-31408732)
chr7 (15-96)||(24001031-24001112)
chr7 (15-96)||(31513287-31513368)
chr7 (15-96)||(42538450-42538531)
chr7 (15-96)||(42972852-42972933)
chr7 (15-99)||(24280615-24280699)
chr7 (15-99)||(43317440-43317524)
chr7 (15-94)||(10573751-10573830)
chr7 (15-97)||(33384869-33384952)
chr7 (44-97)||(27535279-27535332)
chr7 (15-99)||(44326175-44326259)
chr7 (15-98)||(5194250-5194333)
chr7 (29-96)||(39998408-39998475)
chr7 (15-94)||(43343643-43343722)
chr7 (15-94)||(44416953-44417032)
chr7 (15-97)||(5015394-5015476)
chr7 (15-96)||(5810943-5811024)
chr7 (48-97)||(41861673-41861722)
chr7 (15-99)||(9216299-9216382)
[»] chr3 (16 HSPs)
chr3 (15-97)||(9434123-9434205)
chr3 (15-96)||(36150130-36150211)
chr3 (15-96)||(45126947-45127028)
chr3 (15-95)||(42394438-42394518)
chr3 (15-97)||(10457911-10457993)
chr3 (15-97)||(46941052-46941134)
chr3 (15-97)||(52627996-52628078)
chr3 (15-99)||(53581877-53581961)
chr3 (15-95)||(54237097-54237177)
chr3 (15-98)||(25996266-25996349)
chr3 (15-97)||(4190284-4190366)
chr3 (15-97)||(24688421-24688503)
chr3 (15-96)||(42100688-42100769)
chr3 (15-97)||(40808864-40808946)
chr3 (63-96)||(34791829-34791862)
chr3 (15-99)||(25413678-25413762)
[»] chr2 (20 HSPs)
chr2 (15-94)||(41281993-41282072)
chr2 (15-97)||(16803967-16804049)
chr2 (15-97)||(16843249-16843331)
chr2 (15-97)||(43114556-43114638)
chr2 (15-99)||(8896602-8896686)
chr2 (15-95)||(19047158-19047238)
chr2 (15-94)||(6518488-6518566)
chr2 (15-94)||(11825673-11825752)
chr2 (28-96)||(16096747-16096815)
chr2 (15-99)||(18491702-18491786)
chr2 (42-97)||(966880-966935)
chr2 (15-99)||(42026764-42026850)
chr2 (15-96)||(12415479-12415560)
chr2 (15-96)||(12427539-12427620)
chr2 (15-95)||(34817795-34817875)
chr2 (15-99)||(43490420-43490504)
chr2 (15-98)||(30838630-30838713)
chr2 (15-97)||(34895760-34895842)
chr2 (15-96)||(1750414-1750495)
chr2 (15-96)||(13780754-13780835)
[»] scaffold0038 (1 HSPs)
scaffold0038 (15-95)||(112656-112736)
[»] scaffold0003 (1 HSPs)
scaffold0003 (15-94)||(45738-45817)
[»] scaffold0385 (1 HSPs)
scaffold0385 (15-97)||(11250-11332)
[»] scaffold0119 (1 HSPs)
scaffold0119 (15-97)||(684-766)
[»] scaffold0100 (1 HSPs)
scaffold0100 (15-96)||(35475-35556)
[»] scaffold0157 (1 HSPs)
scaffold0157 (16-96)||(23441-23521)


Alignment Details
Target: chr6 (Bit Score: 104; Significance: 7e-52; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 107 - 294
Target Start/End: Original strand, 31109508 - 31109678
Alignment:
Q  107 taagatgtgaaattttagcaatattttagccatgacaaacaataaagttttaggtatggaatacacatttaacagttgacaacctttaaaatatgctgaa 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |                
T  31109508 taagatgtgaaattttagcaatattttagccatgacaaacaataaagttttaggtatggaatacacatttaacagttgacaaccttga------------ 31109595  T
Q  207 aaaatcagtgatccaaaat---ttttaaataagtttgtcactcataaggtaaaccttgatgatccaaaatgtaattttgtcaacttaaaag 294  Q
            |||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31109596 --------tgatccaaaatgtaatttaaataagtttgtcactcataaggtaaaccttgatgatccaaaatgtaattttgtcaacttaaaag 31109678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 31109245 - 31109325
Alignment:
Q  19 tgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcctat 99  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  31109245 tgaatttatcaaaatatccctagtgcatggggtgtataatgggatgtatgattaaagggtgttcatgtaacattttcctat 31109325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 9698352 - 9698436
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcctat 99  Q
    |||||||| ||| ||||||||||||  | ||| ||||||| ||||| ||||| || |||||| ||||||||||||||||||||||    
T  9698352 gagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcctat 9698436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 21280010 - 21279926
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcctat 99  Q
    |||||||||||| ||||||||||||  | |||||| |||  |||||||||||  | |||||| ||||||||||||||||||||||    
T  21280010 gagatgaatttaccaaaatatccctaatacatgggatgtgcaatggaatgtagaaataaagggtgttcatgtaacattttcctat 21279926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 13743240 - 13743321
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    |||||||| ||| ||||||||||||  | ||||||||||| ||| | |||||||| |||| | |||||||||||||||||||    
T  13743240 gagatgaacttaccaaaatatccctaatacatggggtgtacaattggatgtatgaataaaaggtgttcatgtaacattttcc 13743321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 13748740 - 13748821
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    |||||||| ||| ||||||||||||  | ||||||||||| ||| | |||||||| |||| | |||||||||||||||||||    
T  13748740 gagatgaacttaccaaaatatccctaatacatggggtgtacaattggatgtatgaataaaaggtgttcatgtaacattttcc 13748821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 21293699 - 21293780
Alignment:
Q  18 atgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcctat 99  Q
    ||||||||| |||||||||| |  | ||||||||||| | || ||||||||| |||||| |||| |||||||||||||||||    
T  21293699 atgaatttaccaaaatatccttaatacatggggtgtacagtgaaatgtatgaataaagggtgtttatgtaacattttcctat 21293780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 30014424 - 30014343
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    |||||||| ||| |||||||| |||  | |||||| |||||||||| ||||| || |||||| |||||||||||||||||||    
T  30014424 gagatgaacttaccaaaatatgcctaatacatgggatgtataatgggatgtaggaataaagggtgttcatgtaacattttcc 30014343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 3213478 - 3213399
Alignment:
Q  18 atgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    ||||||||| |||||||||| |  | ||||||||||| ||||  |||||||| |||||| |||| |||||||||||||||    
T  3213478 atgaatttaccaaaatatccttaatacatggggtgtacaatgagatgtatgaataaagggtgtttatgtaacattttcct 3213399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 33253994 - 33253913
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    |||||||||||| ||| || |||||  ||||||||||||| ||| |  ||| |||||||| | |||||||||||||||||||    
T  33253994 gagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaacattttcc 33253913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 27441623 - 27441544
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 94  Q
    |||||||||||| |||||||||| |  | ||| || |||| ||| |  |||||||||||||| |||||||||||||||||    
T  27441623 gagatgaatttaccaaaatatccttaatacataggatgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 27441544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 7292828 - 7292746
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||| ||| ||||||||||||  | ||| ||||||||||||   ||||||| |||| | ||||| ||||||||||||||    
T  7292828 gagatgaacttaccaaaatatccctaatacatagggtgtataatgaggtgtatgaataaatggtgttcttgtaacattttcct 7292746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 7367630 - 7367548
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||| ||| ||||||||||||  | |||||| |||| ||||   ||||||| |||| ||||||||| ||||||||||||    
T  7367630 gagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtgtatgaataaatgatgttcatataacattttcct 7367548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 26670028 - 26670110
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||| ||| ||||||||||||  | |||| |||||| ||||   |||| || |||||| ||||||||||||||||||||    
T  26670028 gagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcct 26670110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 33242484 - 33242402
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||||||| |||||| ||| |  | ||||||||||| |||    |||||||||||| | ||||||||||||||||||||    
T  33242484 gagatgaatttaccaaaatgtccttaatacatggggtgtacaataaggtgtatgattaaatggtgttcatgtaacattttcct 33242402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 55272395 - 55272476
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    |||||||||||| |||||||||| |  ||||||||||||| ||| || ||||||||||||||||||||||||||||||||||    
T  55272395 gagatgaatttaccaaaatatccttaatgcatggggtgtacaatagagtgtatgattaaaggatgttcatgtaacattttcc 55272476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 28988554 - 28988472
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    ||||||||||||||||||| ||||| |||||||||||||| ||||   ||||||| |||||| ||||||||||||||||||||    
T  28988554 gagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaagggtgttcatgtaacattttcct 28988472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 32728438 - 32728355
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttccta 98  Q
    ||||||||||||  ||||| ||| |  ||||||||||||| ||| |  ||||||||||||||||||||||||||||||||||||    
T  32728438 gagatgaatttactaaaatgtccttaatgcatggggtgtacaatagggtgtatgattaaaggatgttcatgtaacattttccta 32728355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 712041 - 711959
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||||||| |||||||||| |  ||||| ||||||| ||| |  |||||||||||||| ||||||||||||||||||||    
T  712041 gagatgaatttaccaaaatatccttaatgcatagggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcct 711959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 960890 - 960971
Alignment:
Q  16 agatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    ||||||||||| |||||| |||||  || || ||||||| ||| || |||||||||||||| ||||||||||||||||||||    
T  960890 agatgaatttaccaaaatgtccctaatgtatagggtgtacaatagagtgtatgattaaagggtgttcatgtaacattttcct 960971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 17619171 - 17619252
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    |||||||||||| |||||||||| |  ||||||||||||| ||| |  |||||||||||| | |||||||||||||||||||    
T  17619171 gagatgaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaaaggtgttcatgtaacattttcc 17619252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 35037086 - 35037007
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 94  Q
    |||||||||||| |||||||||| |  ||||||||||||| ||| || |||||| ||||||| || ||||||||||||||    
T  35037086 gagatgaatttaccaaaatatccttaatgcatggggtgtacaatagagtgtatggttaaagggtgctcatgtaacatttt 35037007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 1771285 - 1771367
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||| ||||||||||||| ||  | ||||||||||| |||||  |||| || |||||| ||||||||||||||||||||    
T  1771285 gagatgaacttatcaaaatatctctaatacatggggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcct 1771367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 27864645 - 27864563
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||| ||| ||||||||||||  | ||||||||||| ||||| |||||||| |||| | |||| |||||||||||||||    
T  27864645 gagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacattttcct 27864563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 55966365 - 55966447
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||| ||| ||||||||||||  | |||||| |||| ||||| |||||||| |||||| |||| |||||||||||||||    
T  55966365 gagatgaacttaccaaaatatccctaatacatgggatgtacaatgggatgtatgaataaagggtgtttatgtaacattttcct 55966447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 3756265 - 3756344
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 94  Q
    ||||| ||||||  ||||||||| |  ||||||||||||| ||| |  |||||||||||||| |||||||||||||||||    
T  3756265 gagataaatttactaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 3756344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 27893861 - 27893940
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 94  Q
    |||||||| ||| ||||||||||||  | ||||||||||| ||||| |||||||| |||| | |||| ||||||||||||    
T  27893861 gagatgaaattaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttt 27893940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 38851594 - 38851515
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 94  Q
    ||||||||||||||||||| ||| |  ||||||| ||||| | |   ||||||||||||||||| |||||||||||||||    
T  38851594 gagatgaatttatcaaaatgtccataatgcatggagtgtacattatgatgtatgattaaaggatattcatgtaacatttt 38851515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 46827752 - 46827807
Alignment:
Q  42 tgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    ||||| ||||||| ||| || |||||||||||||| ||||||||||||||||||||    
T  46827752 tgcattgggtgtacaatagagtgtatgattaaagggtgttcatgtaacattttcct 46827807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 48463469 - 48463552
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttccta 98  Q
    |||||||| ||| ||||||||||||  | |||||| |||| |||| ||||||||| |||| | |||| ||||||||||||||||    
T  48463469 gagatgaacttaccaaaatatccctaatacatgggatgtacaatgaaatgtatgaataaatggtgtttatgtaacattttccta 48463552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 49229684 - 49229766
Alignment:
Q  16 agatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttccta 98  Q
    ||||||||||| || ||||||| |  ||||||  ||||| ||| |  |||||||||||||||||||||| |||||||||||||    
T  49229684 agatgaatttaccagaatatccttaatgcatgaagtgtacaatagggtgtatgattaaaggatgttcatataacattttccta 49229766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 27550389 - 27550309
Alignment:
Q  16 agatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    ||||||| ||| ||||||||||||  | |||| |||||| |||||| ||||  | |||||| |||||||||||||||||||    
T  27550389 agatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagggtgttcatgtaacattttcc 27550309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 41878487 - 41878407
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttc 95  Q
    |||||||| ||||||||||||||||  || || ||||||| ||||   ||||||| |||||  ||||||||||||||||||    
T  41878487 gagatgaacttatcaaaatatccctaatggatagggtgtacaatgaggtgtatgaataaagagtgttcatgtaacattttc 41878407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 48435598 - 48435682
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcctat 99  Q
    |||||||||||| ||| || |||||  ||||||||||||| ||| |  ||| |||||||| | ||||||||||||| ||||||||    
T  48435598 gagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaacactttcctat 48435682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 43735823 - 43735744
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 94  Q
    |||||||| ||||||||||||| ||  | |||||  |||||||||  ||||| || |||||||||||||||||| |||||    
T  43735823 gagatgaacttatcaaaatatctctaatacatggaatgtataatgagatgtaggaataaaggatgttcatgtaatatttt 43735744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 33703222 - 33703140
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||| ||| ||||||||||||  | ||||||||||| |||   |||||  | |||||| ||||||||||||||||||||    
T  33703222 gagatgaacttaccaaaatatccctaatacatggggtgtacaataagatgtagaaataaagggtgttcatgtaacattttcct 33703140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 35017813 - 35017733
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    |||||||| ||| ||||||||||||  | ||||||||||| ||||  || || || |||||| |||||||||||||||||||    
T  35017813 gagatgaacttaccaaaatatcccta-tacatggggtgtacaatgagatataggaataaagggtgttcatgtaacattttcc 35017733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 12497036 - 12496956
Alignment:
Q  16 agatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    ||||||| ||| ||||||||| ||  | |||||| |||| |||||| |||| || |||||| ||||||| |||||||||||    
T  12497036 agatgaacttaccaaaatatctctaatacatgggatgtacaatggagtgtaggaataaagggtgttcatataacattttcc 12496956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 7617214 - 7617132
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||| ||| ||||||||||||  | |||||||||||||||||| ||||||| |||||| ||||||||||||||||||||    
T  7617214 gagatgaacttaccaaaatatccctaatacatggggtgtataatggagtgtatgaataaagggtgttcatgtaacattttcct 7617132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 38470657 - 38470578
Alignment:
Q  18 atgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    ||||||||| |||||||||| |  | ||||||||||| |||||||||||||| |||||| |||| |||||||||||||||    
T  38470657 atgaatttaccaaaatatccttaatacatggggtgtacaatggaatgtatgaataaagggtgtttatgtaacattttcct 38470578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 17208155 - 17208071
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcctat 99  Q
    |||||||||||| |||||| ||| |  ||||||||||||| |||  | |||||||||||||| |||||| |||||||||||||||    
T  17208155 gagatgaatttaccaaaatgtccttaatgcatggggtgtacaataaagtgtatgattaaagggtgttcacgtaacattttcctat 17208071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 2614668 - 2614749
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    |||||||| ||| ||||||||||||  | ||| ||||||| ||||| ||||| || |||||| |||||||||||||||||||    
T  2614668 gagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 2614749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 22512386 - 22512305
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    |||||||| ||| ||||||||||||  | ||||| ||||| |||||| |||| || |||||| |||||||||||||||||||    
T  22512386 gagatgaacttaccaaaatatccctaatacatggagtgtacaatggagtgtaggaataaagggtgttcatgtaacattttcc 22512305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 32473413 - 32473494
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    |||||||| ||| ||||||||||||  |||||| |||||| |||    |||||||||||||| |||||||||||||||||||    
T  32473413 gagatgaaattaccaaaatatccctaatgcatgtggtgtacaataaggtgtatgattaaagggtgttcatgtaacattttcc 32473494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 41334682 - 41334763
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    |||||||| ||| ||||||||||||  | ||| ||||||||||||   ||||||| |||||| |||||||||||||||||||    
T  41334682 gagatgaacttaccaaaatatccctaatacatagggtgtataatgaggtgtatgaataaagggtgttcatgtaacattttcc 41334763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 5257076 - 5256997
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 94  Q
    |||||||| ||| ||||||||||||  | ||||||||||| ||||| |||||||| |||| | |||| ||||||||||||    
T  5257076 gagatgaaattaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttt 5256997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 18034063 - 18033981
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||| |||  |||||||||||  | ||| ||||||| |||||| |||| || |||||| ||||||||||||||||||||    
T  18034063 gagatgaacttacaaaaatatccctaatacatagggtgtacaatggagtgtaggaataaagggtgttcatgtaacattttcct 18033981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 97
Target Start/End: Original strand, 30622785 - 30622819
Alignment:
Q  63 tgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||||||||||||||||||||||||||||||    
T  30622785 tgtatgattaaaggatgttcatgtaacattttcct 30622819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 33801550 - 33801468
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||| |||  |||||||||||  | ||||| ||||| |||||  ||||  | |||||||||||||||||||||||||||    
T  33801550 gagatgaacttactaaaatatccctaatacatggagtgtacaatggggtgtagaaataaaggatgttcatgtaacattttcct 33801468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 33855091 - 33855143
Alignment:
Q  44 catggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    ||||||||||| |||||  |||| || |||||| |||||||||||||||||||    
T  33855091 catggggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 33855143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 45705906 - 45705823
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttccta 98  Q
    ||||||||||||||||||| ||| |  ||||||| ||||| ||| ||||||||||||||||| ||||||| |||||||||||||    
T  45705906 gagatgaatttatcaaaatgtccataatgcatggagtgtacaatagaatgtatgattaaagggtgttcatataacattttccta 45705823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 48119709 - 48119628
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    |||||||||||| |||||||||| |  ||||||||||||| ||| |  |||||||||||||| |||||||||||||||||||    
T  48119709 gagatgaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 48119628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 44112758 - 44112676
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||| ||| |||||| |||||  ||||||||||||| ||| |  |||||||||||||| ||||||||||||||||||||    
T  44112758 gagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcct 44112676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 45639751 - 45639833
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||||||| |||||||||| |  || |||||||||| ||| | ||||||||||||||  ||||||||||||||||||||    
T  45639751 gagatgaatttaccaaaatatccttaatgtatggggtgtacaataggatgtatgattaaagagtgttcatgtaacattttcct 45639833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 35003375 - 35003294
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    |||||||||||| |||||||||| |  || |||||||||| ||| |  |||||||||||||| |||||||||||||||||||    
T  35003375 gagatgaatttaccaaaatatccttaatgtatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 35003294  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 46168464 - 46168383
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    |||||||||||| |||||||||| |  ||||| ||||||| ||| | || |||||||||||| |||||||||||||||||||    
T  46168464 gagatgaatttaccaaaatatccttaatgcattgggtgtacaataggatatatgattaaagggtgttcatgtaacattttcc 46168383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 750324 - 750408
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcctat 99  Q
    |||||||||||||||||||||||||| | ||||||||||| |||||  |||| ||   |||| |||||| |||||||||||||||    
T  750324 gagatgaatttatcaaaatatccctgatacatggggtgtacaatggggtgtaggaaataagggtgttcacgtaacattttcctat 750408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 5489857 - 5489775
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||| ||| ||||||||||||  | ||| ||||||| ||||| ||||| || |||||| ||||||||||||||||||||    
T  5489857 gagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcct 5489775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 26585543 - 26585461
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    ||||||||||||  ||||||||| |  ||||||||||||| |||  | ||||||||||||| |||||||| ||||||||||||    
T  26585543 gagatgaatttactaaaatatccttaatgcatggggtgtacaatatagtgtatgattaaagaatgttcatctaacattttcct 26585461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 38335999 - 38335918
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    |||||||||||| |||||||||| |  |||||||| |||| |||    |||||||||||||| |||||||||||||||||||    
T  38335999 gagatgaatttaccaaaatatccttaatgcatgggatgtacaataaggtgtatgattaaagggtgttcatgtaacattttcc 38335918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 38113214 - 38113297
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttccta 98  Q
    |||||||||||| |||||| ||  |  ||||||||||||| ||| |  |||||||||||||| ||||||| |||||||||||||    
T  38113214 gagatgaatttaccaaaatgtcattaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatataacattttccta 38113297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 41065234 - 41065151
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttccta 98  Q
    |||||||| ||| ||||||  ||||  ||||||||||||| ||  |  |||||||||||||| |||||||||||||||||||||    
T  41065234 gagatgaaattaccaaaatgcccctaatgcatggggtgtacaacagggtgtatgattaaagggtgttcatgtaacattttccta 41065151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 37814856 - 37814778
Alignment:
Q  18 atgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    ||||||||| |||||||||| |  | ||||||||||| ||||  |||||||| |||||| |||| ||||||||||||||    
T  37814856 atgaatttaccaaaatatccttaatacatggggtgtacaatgagatgtatgaataaagggtgtttatgtaacattttcc 37814778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 43571105 - 43571186
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    |||||||| ||| ||||||||||||  | ||||||||||| ||||   |||| || |||||| |||||||||||||||||||    
T  43571105 gagatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 43571186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 45427764 - 45427848
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcctat 99  Q
    |||||||| ||| |||||| |||||  ||||||| ||||| ||| |  |||||||||||| | | ||||||||||||||||||||    
T  45427764 gagatgaaattaccaaaatgtccctaatgcatggagtgtacaatagggtgtatgattaaaaggtattcatgtaacattttcctat 45427848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 2497581 - 2497660
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 94  Q
    |||||||| ||| |||||||||| |  |  |||||||||| |||||||||||||| |||| | |||| ||||||||||||    
T  2497581 gagatgaacttaccaaaatatccttaatatatggggtgtacaatggaatgtatgaataaatggtgtttatgtaacatttt 2497660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 7447906 - 7447828
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 94  Q
    |||||||| |||||||||||||  |  | ||| ||||||| ||||| ||||| || ||||||||||||||||||||||||    
T  7447906 gagatgaacttatcaaaatatctgtaatacat-gggtgtacaatgggatgtaggaataaaggatgttcatgtaacatttt 7447828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 14427401 - 14427346
Alignment:
Q  42 tgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||| |||||| ||| |  |||||||||||||| ||||||||||||||||||||    
T  14427401 tgcatgaggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcct 14427346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 48498981 - 48499063
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||| ||| ||||||||||||  | |||| |||||| |||||| ||||  | |||||  ||||||||||||||||||||    
T  48498981 gagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcct 48499063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 35000132 - 35000213
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    ||||| ||||||||||||| |||||  | ||||  || || ||| || |||||||||||| | |||||||||||||||||||    
T  35000132 gagataaatttatcaaaatgtccctaatacatgaagtatacaatagagtgtatgattaaaaggtgttcatgtaacattttcc 35000213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 34304869 - 34304787
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||| ||| |||||| |||||  ||||||||||||| ||| |  |||||||||||||||||||||||||||||||||||    
T  34304869 gagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaaggatgttcatgtaacattttcct 34304787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 18066737 - 18066820
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttccta 98  Q
    |||||||| |||  |||||||||||  | |||||| |||| ||| ||||||||||||||||| |||||||||||||||||||||    
T  18066737 gagatgaaattactaaaatatccctaatacatgggatgtacaatagaatgtatgattaaagggtgttcatgtaacattttccta 18066820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 35181597 - 35181515
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||| ||| |||||| |||||  ||||||||||||| ||| |  |||||||||||||| ||||||||||||||||||||    
T  35181597 gagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcct 35181515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 26125716 - 26125637
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 94  Q
    |||||||| ||| ||||||||||||  | ||| ||||||| |||||||||||||| |||||| |||| ||||||||||||    
T  26125716 gagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtatgaataaagggtgtttatgtaacatttt 26125637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 36743502 - 36743584
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||| ||| ||||||||||||  | ||| ||||||| ||||| ||||| || |||||| ||||||||||||||||||||    
T  36743502 gagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcct 36743584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 11582847 - 11582766
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    |||||||| ||| ||||||||||||  | ||| ||||||| ||||| ||||| || |||||| |||||||||||||||||||    
T  11582847 gagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 11582766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 29705443 - 29705362
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    |||||||| ||||||||||||||||  | ||||||||||| |||||  ||||  | |||||| |||||||||||||||||||    
T  29705443 gagatgaacttatcaaaatatccctaatacatggggtgtacaatggggtgtagaaataaagggtgttcatgtaacattttcc 29705362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 16603645 - 16603729
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcctat 99  Q
    |||||||||||| |||||| ||  |  |||||||||||||||||    |||||||||||||| ||| ||||||||||||||||||    
T  16603645 gagatgaatttaccaaaatgtctttaatgcatggggtgtataataaggtgtatgattaaagggtgtgcatgtaacattttcctat 16603729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 29800969 - 29801053
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcctat 99  Q
    |||||||| ||| ||||||||||||  | ||||||||||| ||||| |||||||| |||| | |||| |||||||||||| ||||    
T  29800969 gagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttttctat 29801053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 30660762 - 30660843
Alignment:
Q  16 agatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    ||||||| ||| ||||||||||||  | ||| ||||||| ||||| |||||  | |||||| ||||||||||||||||||||    
T  30660762 agatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtagaaataaagggtgttcatgtaacattttcct 30660843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 20148841 - 20148757
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcctat 99  Q
    |||||||| ||| ||||||||||||  |  ||| |||||| ||||| |||||||| |||||| |||| |||||||||||| ||||    
T  20148841 gagatgaacttaccaaaatatccctaatatatgaggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttttctat 20148757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 31384745 - 31384661
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcctat 99  Q
    |||||||| ||| |||||||| |||  | ||||||||||| ||| ||||||| || |||||| ||||||||||| | ||||||||    
T  31384745 gagatgaacttaccaaaatattcctaatacatggggtgtacaatagaatgtaagaataaagggtgttcatgtaatactttcctat 31384661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 5754984 - 5754902
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||| ||| ||||||||||||  |  ||||| |||| ||||| ||||| || |||| | ||||||||||||||||||||    
T  5754984 gagatgaacttaccaaaatatccctaatatatgggatgtacaatgggatgtaggaataaaaggtgttcatgtaacattttcct 5754902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 97
Target Start/End: Original strand, 19386637 - 19386671
Alignment:
Q  63 tgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||||||||| ||||||||||||||||||||    
T  19386637 tgtatgattaaagggtgttcatgtaacattttcct 19386671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 16358852 - 16358933
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttc-atgtaacattttc 95  Q
    ||||||||||||||||||||| | |  |||||||| |||| ||| |  |||||||||||||| | ||| |||||||||||||    
T  16358852 gagatgaatttatcaaaatattcttaatgcatgggatgtacaatagggtgtatgattaaagggtcttcaatgtaacattttc 16358933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 2547077 - 2546993
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcctat 99  Q
    |||||||| |||  |||||||||||  | |||| |||||| |||||| ||||  | |||||  ||||||||||||||||||||||    
T  2547077 gagatgaacttactaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcctat 2546993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 40237000 - 40236918
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||| ||| |||||| |||||  ||||||||||||| ||| | ||||||||||||||| ||||||||||||||||||||    
T  40237000 gagatgaaattaccaaaatgtccctaatgcatggggtgtacaataggatgtatgattaaagggtgttcatgtaacattttcct 40236918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 31408655 - 31408732
Alignment:
Q  18 atgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttc 95  Q
    ||||||||| |||||||||| |  |||||||| |||| ||| || |||||||||||||| ||||||||||||||||||    
T  31408655 atgaatttaccaaaatatccttaatgcatgggatgtacaatagagtgtatgattaaagggtgttcatgtaacattttc 31408732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 24001031 - 24001112
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    |||||||| ||| ||||||||||||  | ||| ||||||| ||||| ||||| || |||||| |||||||||||||||||||    
T  24001031 gagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 24001112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 31513368 - 31513287
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    |||||||||||| |||||||||| |  |||||||||| || ||| |  |||||||||||||  |||||||||||||||||||    
T  31513368 gagatgaatttaccaaaatatccttaatgcatggggtatacaatagggtgtatgattaaagagtgttcatgtaacattttcc 31513287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 42538450 - 42538531
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    |||||||| ||| ||||||||||||  | ||| ||||||| ||||| ||||| || |||||| |||||||||||||||||||    
T  42538450 gagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 42538531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 42972933 - 42972852
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    |||||||| ||| ||||||||||||  | |||| |||||| |||||| |||| || ||||||||||||| ||||||||||||    
T  42972933 gagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtaggaataaaggatgttcaggtaacattttcc 42972852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 24280615 - 24280699
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcctat 99  Q
    |||||||||||| ||||||||  || ||||||||| |||| ||| |  ||||||| |||||| |||||| |||||||||||||||    
T  24280615 gagatgaatttaccaaaatatttctagtgcatgggatgtagaatagggtgtatgaataaagggtgttcacgtaacattttcctat 24280699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 43317524 - 43317440
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcctat 99  Q
    |||||||||||||||||||||||||   |||| || |||| ||||   ||||||| |||| | ||||||||||||||||||||||    
T  43317524 gagatgaatttatcaaaatatccctaaagcataggatgtacaatgaggtgtatgaataaatggtgttcatgtaacattttcctat 43317440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 10573830 - 10573751
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 94  Q
    |||||||||||| |||||||| |||  | ||||||||||| ||| | |||||||| |||||| |||| ||||||||||||    
T  10573830 gagatgaatttaccaaaatattcctaatacatggggtgtacaataggatgtatgaataaagggtgtttatgtaacatttt 10573751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 33384952 - 33384869
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataat-ggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||||||| |||||| |||||  ||||||| || || ||| ||  |||||||||||| ||||||||||||||||||||||    
T  33384952 gagatgaatttaccaaaatgtccctaatgcatggagtatacaataggggtgtatgattaaatgatgttcatgtaacattttcct 33384869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 27535279 - 27535332
Alignment:
Q  44 catggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    ||||| ||||| ||| || |||||||||||||| ||||||||||||||||||||    
T  27535279 catggagtgtacaatagagtgtatgattaaagggtgttcatgtaacattttcct 27535332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 44326259 - 44326175
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcctat 99  Q
    |||||||| ||| ||||||||||||  |  ||| |||||| ||||| |||||||| |||||| |||| |||||||||||| ||||    
T  44326259 gagatgaacttaccaaaatatccctaatatatgaggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttttctat 44326175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 5194250 - 5194333
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttccta 98  Q
    ||||||||||||||||||||||| |    ||| ||||||| ||||   ||||||| |||| | |||||||||||||||||||||    
T  5194250 gagatgaatttatcaaaatatccttaaaacatagggtgtacaatgaggtgtatgaataaatggtgttcatgtaacattttccta 5194333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 39998475 - 39998408
Alignment:
Q  29 aaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    |||||||||||  | ||||||||||| ||| | |||||||||||||   |||||||||||||||||||    
T  39998475 aaaatatccctaatacatggggtgtacaataggatgtatgattaaaatgtgttcatgtaacattttcc 39998408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 43343643 - 43343722
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 94  Q
    |||||||| ||||||||||||||||  | ||||||||||| ||| |  ||||  | |||| |||||||||||||||||||    
T  43343643 gagatgaacttatcaaaatatccctaatacatggggtgtacaatagggtgtagaaataaatgatgttcatgtaacatttt 43343722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 44416953 - 44417032
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 94  Q
    |||||||| ||||||||||||||||  | ||||||||||| ||| |  ||||  | |||| |||||||||||||||||||    
T  44416953 gagatgaacttatcaaaatatccctaatacatggggtgtacaatagggtgtagaaataaatgatgttcatgtaacatttt 44417032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 5015476 - 5015394
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||| ||| ||||||||||||  | |||| |||||| |||||| ||||  | |||||  ||||||||||||||||||||    
T  5015476 gagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcct 5015394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 5810943 - 5811024
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    |||||||| ||||||||||||||||  |  || ||||||| |||||  |||| || |||||| || ||||||||||||||||    
T  5810943 gagatgaacttatcaaaatatccctaatatatagggtgtacaatggggtgtaggaataaagggtggtcatgtaacattttcc 5811024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 41861722 - 41861673
Alignment:
Q  48 gggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    ||||||||||| |  ||||||| |||||| ||||||||||||||||||||    
T  41861722 gggtgtataattgggtgtatgaataaagggtgttcatgtaacattttcct 41861673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 9216382 - 9216299
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcctat 99  Q
    |||||||| ||| ||||||||| ||  |||||||| |||| ||| | || || || |||||| ||||||||||||||||||||||    
T  9216382 gagatgaacttaccaaaatatctctaatgcatggg-tgtacaataggatataggaataaagggtgttcatgtaacattttcctat 9216299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 9434205 - 9434123
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||| ||| |||||| |||||  ||||||||||||| ||| || |||||||||||||| ||||||||||||||||||||    
T  9434205 gagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagagtgtatgattaaagggtgttcatgtaacattttcct 9434123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 36150211 - 36150130
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    |||||||| ||| ||||||||||||| | ||| |||||||||||||  ||||||| |||||| | |||||||||||||||||    
T  36150211 gagatgaacttaccaaaatatccctgatacatagggtgtataatggggtgtatgaataaagggtattcatgtaacattttcc 36150130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 45126947 - 45127028
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    |||||||| ||| ||||||||||||  | ||||||||||| ||||| |||||||| |||||| |||| ||||||||||||||    
T  45126947 gagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaagggtgtttatgtaacattttcc 45127028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 42394438 - 42394518
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttc 95  Q
    |||||||| ||| ||||||||||||  | ||| ||||||| ||||||||||| || |||||| ||||||||||||||||||    
T  42394438 gagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacattttc 42394518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 10457911 - 10457993
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    ||||| |||||| |||||||||| |  ||||||||||||| ||| |  |||||||||||| | ||||||||||||||||||||    
T  10457911 gagataaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaaaggtgttcatgtaacattttcct 10457993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 46941134 - 46941052
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||| ||| ||||||||||||  | ||||||||||| ||||  ||||| || |||||| ||||||||||||||||||||    
T  46941134 gagatgaacttaccaaaatatccctaatacatggggtgtacaatgagatgtaggaataaagggtgttcatgtaacattttcct 46941052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 52627996 - 52628078
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||||||| |||||||| | |  |||||| |||||| ||| | ||||||||||||||| |||||| |||||||||||||    
T  52627996 gagatgaatttaccaaaatatacttaatgcatgaggtgtacaataggatgtatgattaaagggtgttcacgtaacattttcct 52628078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 53581877 - 53581961
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcctat 99  Q
    |||||||| ||||||||||||||||  | ||| || |||| |||||| ||||||| |||||  ||||||||||||||||| ||||    
T  53581877 gagatgaacttatcaaaatatccctaatacataggatgtacaatggagtgtatgaataaagagtgttcatgtaacatttttctat 53581961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 54237177 - 54237097
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttc 95  Q
    |||||||| ||| ||||||||||||  | ||| ||||||| ||||| ||||| || |||||| ||||||||||||||||||    
T  54237177 gagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttc 54237097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 25996349 - 25996266
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttccta 98  Q
    |||||||||||| |||||| ||| |  |  |||||||||| |||   ||||||||||||||| |||||||||||||||||||||    
T  25996349 gagatgaatttaccaaaatgtccttaatatatggggtgtacaataagatgtatgattaaagggtgttcatgtaacattttccta 25996266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 4190284 - 4190366
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||||||| ||||||||| ||  | |||  |||||| ||| |  |||||||||||||| ||||||||||||||||||||    
T  4190284 gagatgaatttaccaaaatatctctaatacataaggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcct 4190366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 24688421 - 24688503
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||| ||| ||||||||||||  | ||| ||||||| |||||| ||||  | |||||| ||||||||||||||||||||    
T  24688421 gagatgaacttaccaaaatatccctaatacatagggtgtacaatggagtgtagaaataaagggtgttcatgtaacattttcct 24688503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 42100769 - 42100688
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    |||||||| ||| ||||||||||||  | ||||||||||| ||||   |||| || |||||| |||||||||||||||||||    
T  42100769 gagatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 42100688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 40808946 - 40808864
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||| ||| ||||||||||||  | ||||||||||| |||||  |||| || |||| | |||| |||||||||||||||    
T  40808946 gagatgaacttaccaaaatatccctaatacatggggtgtacaatggggtgtaggaataaatggtgttgatgtaacattttcct 40808864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 96
Target Start/End: Complemental strand, 34791862 - 34791829
Alignment:
Q  63 tgtatgattaaaggatgttcatgtaacattttcc 96  Q
    |||||||||||||| |||||||||||||||||||    
T  34791862 tgtatgattaaagggtgttcatgtaacattttcc 34791829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 25413762 - 25413678
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcctat 99  Q
    |||||||| |||  |||||||||||  | |||  |||||| |||||  |||| || |||||| ||||||||||||||||||||||    
T  25413762 gagatgaacttacaaaaatatccctaatacataaggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcctat 25413678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 41281993 - 41282072
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 94  Q
    |||||||| |||||||||| |||||  ||||||||||||| ||| |  |||||||||||||| |||||||||||||||||    
T  41281993 gagatgaaattatcaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 41282072  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 16804049 - 16803967
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||| |||||||||| |||||  |||||||| |||| ||| |  |||||||||||||| ||||||||||||||||||||    
T  16804049 gagatgaaattatcaaaatgtccctaatgcatgggatgtacaatagggtgtatgattaaagggtgttcatgtaacattttcct 16803967  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 16843331 - 16843249
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||| |||||||||| |||||  |||||||| |||| ||| |  |||||||||||||| ||||||||||||||||||||    
T  16843331 gagatgaaattatcaaaatgtccctaatgcatgggatgtacaatagggtgtatgattaaagggtgttcatgtaacattttcct 16843249  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 43114638 - 43114556
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||| ||| |||||| |||||  ||||||||||||| ||| |  |||||||||||||| ||||||||||||||||||||    
T  43114638 gagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcct 43114556  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 8896602 - 8896686
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcctat 99  Q
    |||||||||||| |||||||| |||  || || ||||||| |||||||||| ||| |||||| ||||||||||||||||| ||||    
T  8896602 gagatgaatttaccaaaatattcctattgtatagggtgtacaatggaatgtgtgaataaagggtgttcatgtaacatttttctat 8896686  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 19047238 - 19047158
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttc 95  Q
    |||||||| ||| ||||||||||||  | ||| ||||||| ||||||||||| || |||||| ||||||||||||||||||    
T  19047238 gagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacattttc 19047158  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 6518488 - 6518566
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 94  Q
    |||||||| ||| |||||| |||||  ||||||||||||| ||| || |||||||||||||| |||||||||||||||||    
T  6518488 gagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagagtgtatgattaaagg-tgttcatgtaacatttt 6518566  T

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Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 11825673 - 11825752
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 94  Q
    |||||||| ||| |||||| |||||  ||||||||||||| ||| |  |||||||||||||| |||||||||||||||||    
T  11825673 gagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 11825752  T

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Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 16096815 - 16096747
Alignment:
Q  28 caaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    ||||||||||||  | |||||||||||||||||  |||| || |||||| |||||||||||||||||||    
T  16096815 caaaatatccctaatacatggggtgtataatggggtgtaggaataaagggtgttcatgtaacattttcc 16096747  T

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Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 18491786 - 18491702
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcctat 99  Q
    |||||||||||| |||||| | | |  |||||| |||||| ||| |  |||||||||||||| ||||||||||||||||||||||    
T  18491786 gagatgaatttaccaaaatgttcttaatgcatgaggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcctat 18491702  T

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Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 966880 - 966935
Alignment:
Q  42 tgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    ||||||||||||| ||| |  |||||||||||||| ||||||||||||||||||||    
T  966880 tgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcct 966935  T

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Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 42026850 - 42026764
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaa--ggatgttcatgtaacattttcctat 99  Q
    |||||||||||  ||||||||||||  |||  ||| |||| |||||||||||||| ||||  || ||||||||||||||||||||||    
T  42026850 gagatgaatttgccaaaatatccctaatgcgcgggatgtacaatggaatgtatgaataaattgggtgttcatgtaacattttcctat 42026764  T

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Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 12415479 - 12415560
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    ||||| || ||| |||||| |||||  ||||||||||||| |||    |||||||||||||| |||||||||||||||||||    
T  12415479 gagataaaattaccaaaatgtccctaatgcatggggtgtacaataaggtgtatgattaaagggtgttcatgtaacattttcc 12415560  T

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Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 12427539 - 12427620
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    ||||| || ||| |||||| |||||  ||||||||||||| |||    |||||||||||||| |||||||||||||||||||    
T  12427539 gagataaaattaccaaaatgtccctaatgcatggggtgtacaataaggtgtatgattaaagggtgttcatgtaacattttcc 12427620  T

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Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 34817795 - 34817875
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttc 95  Q
    |||||||||||| |||||| | | | |||||||||||||| ||||   ||| ||| |||||| ||||||||||||||||||    
T  34817795 gagatgaatttaccaaaatgtgcgtagtgcatggggtgtacaatgaggtgtgtgaataaagggtgttcatgtaacattttc 34817875  T

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Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 43490420 - 43490504
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcctat 99  Q
    |||||||| ||| ||||||||||||  | ||| | ||||| ||||| ||||| || |||||| ||||||||||||||||| ||||    
T  43490420 gagatgaacttaccaaaatatccctaatacatagagtgtacaatgggatgtaggaataaagggtgttcatgtaacatttttctat 43490504  T

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Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 30838713 - 30838630
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttccta 98  Q
    |||||||| ||| ||||||||||||  | ||||||||||| |||   |||||  | |||||| |||||||||||||||||||||    
T  30838713 gagatgaacttaccaaaatatccctaatacatggggtgtacaataagatgtagaaataaagggtgttcatgtaacattttccta 30838630  T

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Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 34895760 - 34895842
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||||||| ||| || |||||  ||||||||||||| ||| |  ||| |||||||| | ||||||||||||| ||||||    
T  34895760 gagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaacactttcct 34895842  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 1750495 - 1750414
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    |||||||| |||  |||||||||||  | ||| ||||||| |||||  |||| || |||||| |||||||||||||||||||    
T  1750495 gagatgaacttacaaaaatatccctaatacatagggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 1750414  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 13780754 - 13780835
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    |||||||||||||||||||||||||  || |||||||||| ||||   ||| ||| ||||   |||| ||||||||||||||    
T  13780754 gagatgaatttatcaaaatatccctaatgtatggggtgtacaatgaggtgtgtgaataaaatgtgttgatgtaacattttcc 13780835  T

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Target: scaffold0038 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 112736 - 112656
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttc 95  Q
    |||||||| ||| ||||||||||||  | ||| ||||||| ||||||||||| || |||||| ||||||||||||||||||    
T  112736 gagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacattttc 112656  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 45738 - 45817
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 94  Q
    |||||||||||| |||||||||| |  | ||| || |||| ||| |  |||||||||||||| |||||||||||||||||    
T  45738 gagatgaatttaccaaaatatccttaatacataggatgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 45817  T

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Target: scaffold0385 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 11332 - 11250
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||| ||| ||||||||||||  |  |||||||||| |||||  ||||||| |||||  ||||||||| ||||||||||    
T  11332 gagatgaacttaccaaaatatccctaatatatggggtgtacaatggggtgtatgaataaagtgtgttcatgtgacattttcct 11250  T

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Target: scaffold0119 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 766 - 684
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 97  Q
    |||||||| ||| ||||||||||||  | |||| |||||| ||||   |||| || |||||| ||||||||||||||||||||    
T  766 gagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcct 684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 35475 - 35556
Alignment:
Q  15 gagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    |||||||||||| ||| || |||||  ||||||||||||| |||    |||||||||||| | |||| ||||||||||||||    
T  35475 gagatgaatttaccaatatgtccctaatgcatggggtgtacaatatggtgtatgattaaatggtgtttatgtaacattttcc 35556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 23441 - 23521
Alignment:
Q  16 agatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 96  Q
    ||||||| ||| ||||||||| ||  | |||||| |||| |||||| |||| || |||||| ||||||| |||||||||||    
T  23441 agatgaacttaccaaaatatctctaatacatgggatgtacaatggagtgtaggaataaagggtgttcatataacattttcc 23521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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