View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4953_low_7 (Length: 246)
Name: NF4953_low_7
Description: NF4953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4953_low_7 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 246
Target Start/End: Complemental strand, 23820147 - 23819914
Alignment:
| Q |
15 |
tatacacaacacttttagcagtgtgattaccttcattaacaaatcattttgtattactcactaacccaaatgatgtttagtggttgattattgattaagt |
114 |
Q |
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| T |
23820147 |
tatacacaacacttttagcagtgtgattaccttcattaacaaatcattttgtattactcactaacccaaatgatgtttagtagttgattattgattaagt |
23820048 |
T |
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| Q |
115 |
taatgaactcaacagatgaaacatactagaaaaggttaaataaacaaccgaaagtaatttagac--aaaaacatgaaattagtttgtaaatctgtcgtta |
212 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
23820047 |
taatgaactcaacagacgaaacatactagaaaaggttaaataaacaaccgaaagtaatttagacagaaaaacatgaaattagtttgtaaatctgttgtta |
23819948 |
T |
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| Q |
213 |
agaattatcgacaacaaaatttgatagtaatttc |
246 |
Q |
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||||||||||||| |||||||||||||| ||||| |
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| T |
23819947 |
agaattatcgacaccaaaatttgatagtgatttc |
23819914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 23829314 - 23829241
Alignment:
| Q |
15 |
tatacacaacacttttagcagtgtgattaccttcattaacaaatcattttgtattactcactaacccaaatgat |
88 |
Q |
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|||| ||| |||||||||||||||||||||||| || ||||||||| ||| || || ||||||| | ||||||| |
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| T |
23829314 |
tatatacatcacttttagcagtgtgattacctttatcaacaaatcagtttatactagtcactaatcaaaatgat |
23829241 |
T |
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