View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4954-Insertion-2 (Length: 413)

Name: NF4954-Insertion-2
Description: NF4954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4954-Insertion-2
NF4954-Insertion-2
[»] chr5 (6 HSPs)
chr5 (231-412)||(24877949-24878129)
chr5 (154-352)||(25011804-25012006)
chr5 (119-324)||(23374463-23374666)
chr5 (201-276)||(19050159-19050235)
chr5 (208-394)||(23280864-23281049)
chr5 (346-401)||(23374378-23374433)
[»] chr8 (2 HSPs)
chr8 (114-363)||(16225992-16226238)
chr8 (141-231)||(20384091-20384181)
[»] chr2 (5 HSPs)
chr2 (107-395)||(43938673-43938953)
chr2 (146-275)||(15854924-15855054)
chr2 (345-396)||(33408025-33408076)
chr2 (345-374)||(15855126-15855155)
chr2 (345-385)||(19402257-19402297)
[»] scaffold0485 (1 HSPs)
scaffold0485 (116-398)||(4466-4738)
[»] scaffold0016 (2 HSPs)
scaffold0016 (119-324)||(17799-18002)
scaffold0016 (346-401)||(18032-18087)
[»] chr4 (5 HSPs)
chr4 (201-396)||(17396723-17396919)
chr4 (254-361)||(24278-24384)
chr4 (239-334)||(25983564-25983659)
chr4 (245-374)||(25267615-25267744)
chr4 (119-206)||(25983680-25983764)
[»] chr7 (2 HSPs)
chr7 (180-396)||(21926160-21926379)
chr7 (345-393)||(33290861-33290909)
[»] chr6 (2 HSPs)
chr6 (201-267)||(12875665-12875732)
chr6 (279-336)||(22542355-22542412)
[»] chr3 (1 HSPs)
chr3 (241-334)||(2277478-2277571)
[»] chr1 (1 HSPs)
chr1 (237-346)||(33480467-33480576)
[»] scaffold0300 (1 HSPs)
scaffold0300 (157-225)||(14028-14096)
[»] scaffold0103 (1 HSPs)
scaffold0103 (155-223)||(30430-30498)


Alignment Details
Target: chr5 (Bit Score: 118; Significance: 4e-60; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 231 - 412
Target Start/End: Complemental strand, 24878129 - 24877949
Alignment:
Q  231 acatcataaccaattcaaccattattcatcaccttatcattatcatgtaatcatttacaaattaacatagcatgattcatcatttctcaaagtccatcta 330  Q
    ||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||| | ||||    
T  24878129 acatcataatcaatccaatcattattcatcaccttatcattatcatgtaatcatttacaaggtaacatatcatgattcatcatttctcaaagttcgtcta 24878030  T
Q  331 tttttcatatttcacaaagttcgtctattttcacatatttcacacaaaccaagtttcatgctcacacatatcttgatcattc 412  Q
    | ||||||||||||||||||||||||| || ||||||||||||| ||||||| ||||||||||||||||||| | |||||||    
T  24878029 tatttcatatttcacaaagttcgtcta-ttgcacatatttcacataaaccaactttcatgctcacacatatccttatcattc 24877949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 154 - 352
Target Start/End: Original strand, 25011804 - 25012006
Alignment:
Q  154 caacatctcttcatttaggaaaaa---tagcattttagacgattactcatttacacctagttaatcaacatttcatgtacacatca-taaccaattcaac 249  Q
    |||||||||||||||||| |||||   |||||||||||| || || |||||||||||||||||||||| || || |||||| |||| | || |||||||     
T  25011804 caacatctcttcatttagaaaaaaaaatagcattttagaagactaatcatttacacctagttaatcaatatatcttgtacatatcaatcactaattcaat 25011903  T
Q  250 cattattcatcaccttatcattatcatgtaatcatttacaaattaacatagcatgattcatcatttctcaaagtccatctatttttcatatttcacaaag 349  Q
    |||||||||  |||||||||||||||  |||||| |||||| ||||||||||||||||||| ||||||||||||   |||||||  ||||||||||||||    
T  25011904 cattattcagaaccttatcattatcacataatcaattacaagttaacatagcatgattcattatttctcaaagtttgtctatttgacatatttcacaaag 25012003  T
Q  350 ttc 352  Q
    |||    
T  25012004 ttc 25012006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 119 - 324
Target Start/End: Complemental strand, 23374666 - 23374463
Alignment:
Q  119 atcatcatcaaacatttaggcgcacaccaaagaagcaacatctcttcatttaggaaaaatagcattttagacgattactcatttacacctagttaatcaa 218  Q
    ||||||||||||||||||    |||| ||||||| |||||| | ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  23374666 atcatcatcaaacatttac---cacatcaaagaatcaacatatgttcatttagcaaaaatagcattttagacgattaatcatttacacctagttaatcaa 23374570  T
Q  219 catttcatgtacacatc-ataaccaattcaaccattattcatcaccttatcattatcatgtaatcatttacaaattaacatagcatgattcatcatttct 317  Q
      |   ||| | | ||| |  ||||||||||| ||||||||||| ||||||||||||   ||  |||| | || ||| |||||||||||||||||||| |    
T  23374569 tgtagaatgcatatatcaaccaccaattcaactattattcatcaacttatcattatctcataggcattcaaaagttatcatagcatgattcatcatttat 23374470  T
Q  318 caaagtc 324  Q
    |||||||    
T  23374469 caaagtc 23374463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 276
Target Start/End: Original strand, 19050159 - 19050235
Alignment:
Q  201 ttacacctagttaatcaacatttcatgtacacatca-taaccaattcaaccattattcatcaccttatcattatcat 276  Q
    |||||| || ||||||||||||||||  ||| |||| |||||||||||||||||||||||| |||||||||||||||    
T  19050159 ttacacttaattaatcaacatttcattcacatatcaataaccaattcaaccattattcatcgccttatcattatcat 19050235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 394
Target Start/End: Complemental strand, 23281049 - 23280864
Alignment:
Q  208 tagttaatcaacatttcatgtacacatcat-aaccaattcaaccattattcatcaccttatcattatcatgtaatcatttacaaattaacatagcatgat 306  Q
    ||||||||||| |||||||  ||  ||||| ||||||||||| ||||||||||||||||||||| ||||| |||  | | |||| |||||||  ||| ||    
T  23281049 tagttaatcaatatttcattcacttatcattaaccaattcaatcattattcatcaccttatcatcatcatataactaataacaacttaacatgtcataat 23280950  T
Q  307 tcatcatttctcaaagtccatctatttttcatatttcacaaagttcgtctattttcacatatttcacacaaaccaagtttcatgctca 394  Q
    |||||| ||| | |||| | | |||||| || | |||||||||| | | ||||| || ||| |||||  |||||||||||||||||||    
T  23280949 tcatcagttcactaagttcgtatattttccacaattcacaaagtccatttatttcca-ata-ttcacttaaaccaagtttcatgctca 23280864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 346 - 401
Target Start/End: Complemental strand, 23374433 - 23374378
Alignment:
Q  346 aaagttcgtctattttcacatatttcacacaaaccaagtttcatgctcacacatat 401  Q
    |||||||||||||| ||||||||||| |  |||| |||||||||||||| ||||||    
T  23374433 aaagttcgtctattctcacatatttcgccaaaactaagtttcatgctcatacatat 23374378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 114 - 363
Target Start/End: Original strand, 16225992 - 16226238
Alignment:
Q  114 ccataatcatcatcaaacatttaggcgcacaccaaagaagcaacatctcttcatttaggaaaaatagcattttagacgattactcatttacacctagtta 213  Q
    ||||||||||||||||||||||| |   ||| ||||||||  ||||   |||| |||| ||||||||||||||||||||||| |||||||||| ||||||    
T  16225992 ccataatcatcatcaaacatttacg---acaacaaagaagggacattctttcacttagcaaaaatagcattttagacgattaatcatttacacgtagtta 16226088  T
Q  214 atcaacatttcatgtacacatca-taaccaattcaaccattattcatcaccttatcattatcatgtaatcatttacaaattaacatagcatgattcatca 312  Q
    |||||  | ||| ||| | |||| | ||||  ||||| ||||||||||| | |||||||||||| || |||||||| | ||||||||||||||||||| |    
T  16226089 atcaatgtatcaggtatatatcaatcaccatctcaactattattcatcaacatatcattatcatatagtcatttacgagttaacatagcatgattcatta 16226188  T
Q  313 tttctcaaagtccatctatttttcatatttcacaaagttcgtctattttca 363  Q
    ||| |||| |||| |||| ||||||||||||||||||||| ||||||||||    
T  16226189 tttatcaatgtccgtcta-ttttcatatttcacaaagttcatctattttca 16226238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 231
Target Start/End: Original strand, 20384091 - 20384181
Alignment:
Q  141 cacaccaaagaagcaacatctcttcatttaggaaaaatagcattttagacgattactcatttacacctagttaatcaacatttcatgtaca 231  Q
    ||||| |||||| ||| |||  ||||||||| ||||| ||||| ||||||||||| ||| ||||||| |||||||||| || ||| |||||    
T  20384091 cacactaaagaaacaaaatcagttcatttagcaaaaaaagcatcttagacgattaatcacttacaccaagttaatcaatatatcacgtaca 20384181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 107 - 395
Target Start/End: Original strand, 43938673 - 43938953
Alignment:
Q  107 atcatccccataatcatcatcaaacatttaggcgcacaccaaagaagcaacatctcttcatttaggaaaaatagcattttagacgattactcatttacac 206  Q
    |||||| |||||||||||||||||||||||    |||| |||||||| ||||||||||||||||| ||||||| |||||||||||||||  |||||||||    
T  43938673 atcatcaccataatcatcatcaaacatttac---cacatcaaagaagtaacatctcttcatttagcaaaaataacattttagacgattaaccatttacac 43938769  T
Q  207 ctagttaatcaacatttcatgtacacatc-ataaccaattcaaccattattcatcaccttatcattatcatgtaatcatttacaaattaacatagcatga 305  Q
    ||||| ||||||  | ||||| | | ||| |  || |||||||| ||||||||||| |||||||||||||  ||  |||| ||||||||||||| |||||    
T  43938770 ctagtcaatcaatgtatcatgcatatatcaaccacaaattcaactattattcatcaacttatcattatcacatagccattcacaaattaacataacatga 43938869  T
Q  306 ttcatcattt-ctcaaagtccatctatttttcatatttcacaaagttcgtctattttcacatatttcacacaaaccaagtttcatgctcac 395  Q
    |||||| |||  ||||||||| |||| ||||    ||   |||||||||| ||||||||||||||||||  ||| |||||| |||||||||    
T  43938870 ttcatcgtttattcaaagtccgtctaatttt----tt---caaagttcgtttattttcacatatttcaccaaaatcaagttacatgctcac 43938953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 146 - 275
Target Start/End: Original strand, 15854924 - 15855054
Alignment:
Q  146 caaagaagcaacatctcttcatttaggaaaaatagcattttagacgattactcatttacacctagttaatcaacatttcatgtacacatc-ataaccaat 244  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||| |||| ||||||  | ||||| | | ||| |  ||||||    
T  15854924 caaagaagcaacatctcttcatttagcaaaaataacattttagacgattaatcatttacacatagtaaatcaatgtatcatgcatatatcaaccaccaat 15855023  T
Q  245 tcaaccattattcatcaccttatcattatca 275  Q
    ||||| ||||||||||| |||||||||||||    
T  15855024 tcaactattattcatcaacttatcattatca 15855054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 345 - 396
Target Start/End: Original strand, 33408025 - 33408076
Alignment:
Q  345 caaagttcgtctattttcacatatttcacacaaaccaagtttcatgctcaca 396  Q
    |||||||||||||||||||| ||||||||  ||| |||||| ||||||||||    
T  33408025 caaagttcgtctattttcacctatttcaccaaaatcaagttacatgctcaca 33408076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 374
Target Start/End: Original strand, 15855126 - 15855155
Alignment:
Q  345 caaagttcgtctattttcacatatttcaca 374  Q
    ||||||||||||||||||||||||||||||    
T  15855126 caaagttcgtctattttcacatatttcaca 15855155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 385
Target Start/End: Complemental strand, 19402297 - 19402257
Alignment:
Q  345 caaagttcgtctattttcacatatttcacacaaaccaagtt 385  Q
    |||||||||||| ||||||||||||||||  ||||||||||    
T  19402297 caaagttcgtcttttttcacatatttcaccaaaaccaagtt 19402257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0485 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0485
Description:

Target: scaffold0485; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 116 - 398
Target Start/End: Original strand, 4466 - 4738
Alignment:
Q  116 ataatcatcatcaaacatttaggcgcacaccaaagaagcaacatctcttcatttaggaaaa--atagcattttagacgattactcatttacacctagtta 213  Q
    ||||||||||||||||| |||    |||| ||||||||| |||||||||||||||| ||||  ||||||||| ||||||||| ||||||||||||||| |    
T  4466 ataatcatcatcaaacaattac---cacatcaaagaagcgacatctcttcatttagaaaaaaaatagcatttgagacgattaatcatttacacctagtca 4562  T
Q  214 atcaacatttcatgtacacatc-ataaccaattcaaccattattcatcaccttatcattatcatgtaatcatttacaaattaacatagcatgattcatca 312  Q
    |||||  | ||||| | | | | || |||||||| || ||||||||||| |||||||||||||| |  ||||| |||| ||||||| |||||||||||||    
T  4563 atcaatgtatcatgcatatagcaatcaccaattc-actattattcatcaacttatcattatcatatggtcattcacaagttaacatggcatgattcatca 4661  T
Q  313 tttctcaaagtccatctatttttcatatttcacaaagttcgtctattttcacatatttcacacaaaccaagtttcatgctcacaca 398  Q
    ||| ||||||| | ||||||||          |||||||| ||||||||||||||||||||  ||| |||||| |||| |||||||    
T  4662 tttatcaaagttcgtctatttt---------ccaaagttcatctattttcacatatttcaccaaaaacaagttacatgttcacaca 4738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 119 - 324
Target Start/End: Original strand, 17799 - 18002
Alignment:
Q  119 atcatcatcaaacatttaggcgcacaccaaagaagcaacatctcttcatttaggaaaaatagcattttagacgattactcatttacacctagttaatcaa 218  Q
    ||||||||||||||||||    |||| ||||||| |||||| | ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  17799 atcatcatcaaacatttac---cacatcaaagaatcaacatatgttcatttagcaaaaatagcattttagacgattaatcatttacacctagttaatcaa 17895  T
Q  219 catttcatgtacacatc-ataaccaattcaaccattattcatcaccttatcattatcatgtaatcatttacaaattaacatagcatgattcatcatttct 317  Q
      |   ||| | | ||| |  ||||||||||| ||||||||||| ||||||||||||   ||  |||| | || ||| |||||||||||||||||||| |    
T  17896 tgtagaatgcatatatcaaccaccaattcaactattattcatcaacttatcattatctcataggcattcaaaagttatcatagcatgattcatcatttat 17995  T
Q  318 caaagtc 324  Q
    |||||||    
T  17996 caaagtc 18002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 346 - 401
Target Start/End: Original strand, 18032 - 18087
Alignment:
Q  346 aaagttcgtctattttcacatatttcacacaaaccaagtttcatgctcacacatat 401  Q
    |||||||||||||| ||||||||||| |  |||| |||||||||||||| ||||||    
T  18032 aaagttcgtctattctcacatatttcgccaaaactaagtttcatgctcatacatat 18087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 201 - 396
Target Start/End: Original strand, 17396723 - 17396919
Alignment:
Q  201 ttacacctagttaatcaacatttcatgtacacatcat-aaccaattcaaccattattcatcaccttatcattatcatgtaatcatttacaaattaacata 299  Q
    |||||| ||||||||||| |||||||  ||| ||||| ||||||||| || |||||||||||||||||||||||||| |||  | ||||||  | ||||     
T  17396723 ttacacttagttaatcaatatttcattcacatatcattaaccaattcgactattattcatcaccttatcattatcatataacaaattacaaggttacatg 17396822  T
Q  300 gcatgattcatcatttctcaaagtccatctatttttcatat-ttca-caaagttcgtctattttcacatatttcacacaaaccaagtttcatgctcaca 396  Q
     ||| |||||||||||| ||||  || |||| |||||| || |||| | |||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  17396823 ccataattcatcatttcacaaa-accgtcta-ttttcacatcttcacccaagttcgtctcttttcacatatttcacaaaaaccaagtttcatgctcaca 17396919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 254 - 361
Target Start/End: Original strand, 24278 - 24384
Alignment:
Q  254 attcatcaccttatcattatcatgtaatcatttacaaattaacatagcatgattcatcatttctcaaagtccatctatttttcatatttcacaaagttcg 353  Q
    |||||||||||||||| || ||  || |||||||||| |||| ||||||| | || ||||||  |||||||| |||| |||||| |||||||||||||||    
T  24278 attcatcaccttatcaatagcacatagtcatttacaagttaaaatagcataaatcctcattttccaaagtccgtcta-ttttcacatttcacaaagttcg 24376  T
Q  354 tctatttt 361  Q
    ||||||||    
T  24377 tctatttt 24384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 25983659 - 25983564
Alignment:
Q  239 accaattcaaccattattcatcaccttatcattatcatgtaatcatttacaaattaacatagcatgattcatcatttctcaaagtccatctatttt 334  Q
    ||||||||||| |||||||||||  ||||||| ||||  || | ||| |||| |||||||||||||||||||||||| ||||||||  ||||||||    
T  25983659 accaattcaactattattcatcagtttatcataatcacatagtaattcacaagttaacatagcatgattcatcatttatcaaagtctgtctatttt 25983564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 374
Target Start/End: Original strand, 25267615 - 25267744
Alignment:
Q  245 tcaaccattattcatcaccttatcattatcatgtaatcatttacaaattaacatagcatgattcatcatttctcaaagtccatctatttttcatatttca 344  Q
    ||||||||||||||||||| |||||||||||| ||| || || |||   |||| | ||| |||||||| ||| | |||||| |||| |||||||  ||||    
T  25267615 tcaaccattattcatcaccgtatcattatcatataaccaattgcaagccaacaaatcataattcatcaattcactaagtccgtcta-ttttcatcattca 25267713  T
Q  345 ca-aagttcgtctattttcacatatttcaca 374  Q
    || |||||||| |||||| ||| ||||||||    
T  25267714 cataagttcgtatatttttacacatttcaca 25267744  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 206
Target Start/End: Complemental strand, 25983764 - 25983680
Alignment:
Q  119 atcatcatcaaacatttaggcgcacaccaaagaagcaacatctcttcatttaggaaaaatagcattttagacgattactcatttacac 206  Q
    ||||||||||||||||||    ||||  ||||||| || |||||||||||||| ||||||| |||||||||| | || ||||||||||    
T  25983764 atcatcatcaaacatttac---cacattaaagaagaaatatctcttcatttagtaaaaataacattttagacaactaatcatttacac 25983680  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 180 - 396
Target Start/End: Original strand, 21926160 - 21926379
Alignment:
Q  180 gcattttagacgattactcatttacacctagttaatcaacatttcatgtacacatca-taaccaattcaaccattattcatcaccttatcattatcatgt 278  Q
    |||| ||||||||||   || |||||| || |||| ||| |||||||  ||| |||| |||||||||||||| ||||||||||||||||||||||| | |    
T  21926160 gcatattagacgattctccacttacacttaattaaccaatatttcattcacatatcaataaccaattcaacccttattcatcaccttatcattatcctat 21926259  T
Q  279 aatca-tttacaaattaacatagcatgattcatcatttctcaaagtccatctatttt-tcatatttca-caaagttcgtctattttcacatatttcacac 375  Q
    ||  |  ||||||  ||||||  ||| |||||||||||| ||||| || ||||||||  ||| ||||| | ||||| |||||||||||||| |||||||     
T  21926260 aaaaagattacaagctaacatgccataattcatcatttcacaaagcccgtctattttcacat-tttcacctaagtttgtctattttcacatttttcacat 21926358  T
Q  376 aaaccaagtttcatgctcaca 396  Q
    || | |||||||||| |||||    
T  21926359 aacctaagtttcatgttcaca 21926379  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 393
Target Start/End: Complemental strand, 33290909 - 33290861
Alignment:
Q  345 caaagttcgtctattttcacatatttcacacaaaccaagtttcatgctc 393  Q
    |||||||||||||||||||||| |||  || |||||||||| |||||||    
T  33290909 caaagttcgtctattttcacatttttaccaaaaaccaagttacatgctc 33290861  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 201 - 267
Target Start/End: Complemental strand, 12875732 - 12875665
Alignment:
Q  201 ttacacctagttaatcaacatttcatgtacacatca-taaccaattcaaccattattcatcaccttat 267  Q
    |||||| || |||||||| |||||||  ||| |||| | |||||||||||||||||||||||||||||    
T  12875732 ttacacttaattaatcaatatttcattcacatatcaatgaccaattcaaccattattcatcaccttat 12875665  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 336
Target Start/End: Original strand, 22542355 - 22542412
Alignment:
Q  279 aatcatttacaaattaacatagcatgattcatcatttctcaaagtccatctatttttc 336  Q
    |||||||||||| ||||| || ||| | ||||||||| ||||||||| ||||||||||    
T  22542355 aatcatttacaagttaacttatcataaatcatcatttgtcaaagtccgtctatttttc 22542412  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 334
Target Start/End: Complemental strand, 2277571 - 2277478
Alignment:
Q  241 caattcaaccattattcatcaccttatcattatcatgtaatcatttacaaattaacatagcatgattcatcatttctcaaagtccatctatttt 334  Q
    |||||||| ||||||||||||  ||| || || ||| ||||||||||||| ||| |||| ||| | |||| | ||  |||||||||||||||||    
T  2277571 caattcaatcattattcatcatgttaacactagcatataatcatttacaagttatcataacataactcattaatttacaaagtccatctatttt 2277478  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 346
Target Start/End: Original strand, 33480467 - 33480576
Alignment:
Q  237 taaccaattcaaccattattcatcaccttatcattatcatgtaatcatttacaaattaacatagcatgattcatcatttctcaaagtccatctatttttc 336  Q
    |||||||||| ||||||||||||||| |||||| |||| | |||  | ||||||  ||||||   || |||| ||||||| |||||||| |||||||  |    
T  33480467 taaccaattcgaccattattcatcactttatcaatatcgtataacgaattacaagctaacatgctataattcttcatttcacaaagtccgtctatttcac 33480566  T
Q  337 atatttcaca 346  Q
    | ||||||||    
T  33480567 acatttcaca 33480576  T

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Target: scaffold0300 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 14096 - 14028
Alignment:
Q  157 catctcttcatttaggaaaaatagcattttagacgattactcatttacacctagttaatcaacatttca 225  Q
    |||| |||||||||  |||| |||||||  ||||||||| |||||||  ||||||||||| ||||||||    
T  14096 catcacttcatttaacaaaattagcattaaagacgattaatcatttatgcctagttaatccacatttca 14028  T

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Target: scaffold0103 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 30430 - 30498
Alignment:
Q  155 aacatctcttcatttaggaaaaatagcattttagacgattactcatttacacctagttaatcaacattt 223  Q
    |||||| |||||||||  | || |||||||| | ||||||| |||||||| ||||||||||| ||||||    
T  30430 aacatcacttcatttattacaattagcatttgaaacgattaatcatttacgcctagttaatccacattt 30498  T

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