View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4954_high_10 (Length: 314)
Name: NF4954_high_10
Description: NF4954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4954_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 8 - 313
Target Start/End: Original strand, 29981667 - 29981972
Alignment:
| Q |
8 |
ttggtgtttgtgaaacggaagtagaatcatcgcaactcgcttttggtgtgcacttgaacaaatgtcttcatgaatgttattgagagatgaaattgctgtc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29981667 |
ttggtgtttgtgaaacggaagtagaatcatcgcaactcgcttttggtgtgcacttgaacaaatgtcttcatgaatgttattgagagatgaaattgctgtc |
29981766 |
T |
|
| Q |
108 |
atactacgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtctttgctgtcatgttgttttttgttccaaaaaggcaagc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29981767 |
atactacgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtctttgttgtcatgttgttttttgttccaaaaaggcaagc |
29981866 |
T |
|
| Q |
208 |
cattatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttccattaagtgcattgcatatatacataactttcctcgctttcgtgt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29981867 |
cattatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttccattaagtgcattgcatatatacataactttcctcgctttcgtgt |
29981966 |
T |
|
| Q |
308 |
tcctct |
313 |
Q |
| |
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|||||| |
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| T |
29981967 |
tcctct |
29981972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 86 - 308
Target Start/End: Complemental strand, 8156284 - 8156063
Alignment:
| Q |
86 |
attgagagatgaaattgctgtcatactacgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtctttgctgtcatgttgt |
185 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8156284 |
attgagagatgaaattgctgtcataggacgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtctttgttgtcatgttgt |
8156185 |
T |
|
| Q |
186 |
tttttgttccaaaaaggcaagccattatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttccattaagtgcattgcatatatac |
285 |
Q |
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|||||||||| ||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8156184 |
tttttgttcc-aaagggcatgccattatttcttgccttatgaaccattcttatggctgaaggtctttctgagagttccattaagtgcattgcatatatac |
8156086 |
T |
|
| Q |
286 |
ataactttcctcgctttcgtgtt |
308 |
Q |
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|||||||| |||||||||||||| |
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| T |
8156085 |
ataactttgctcgctttcgtgtt |
8156063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 312
Target Start/End: Complemental strand, 51404994 - 51404730
Alignment:
| Q |
45 |
cgcttttggtgtgcacttgaacaaatgtcttcatgaatgttattgagagatgaaattgctgtcatactacgaacattgacactacttaaatgtccataag |
144 |
Q |
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|||||||| || ||||| | |||||| |||||||| ||||| |||||| ||||| |||||||| ||||||||||||||| | || | |||||| | |
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| T |
51404994 |
cgcttttgatgagcactagtacaaatatcttcatggatgttgctgagagcagaaatggctgtcatgggacgaacattgacactgttcaattttccatagg |
51404895 |
T |
|
| Q |
145 |
cttgaaatgcaattaccatttggtctttgctgtcatgttgttttttgttccaaaaaggcaagccattatttcttgccttatgaaccattgttatggctga |
244 |
Q |
| |
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||| || || || |||||||| |||| |||| |||||||||||||||||| |||| ||||| || | ||| || |||||||| | || ||||| |
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| T |
51404894 |
tttggaaagcgataaccatttgatcttca---tcattttgttttttgttccaaaagggcattccattgttacgtgctttgtgaaccatggagatagctga |
51404798 |
T |
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| Q |
245 |
aggtctttctgagagttccattaagtgcattgcatatatacataactttcctcgctttcgtgttcctc |
312 |
Q |
| |
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|| |||||||||||||||||| |||||||||||||| ||||| | ||||||||||||| ||||||| |
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| T |
51404797 |
agatctttctgagagttccatcaagtgcattgcatagatacagagtcttcctcgctttcgggttcctc |
51404730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 86 - 313
Target Start/End: Complemental strand, 7675006 - 7674779
Alignment:
| Q |
86 |
attgagagatgaaattgctgtcatactacgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtctttgctgtcatgttgt |
185 |
Q |
| |
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||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
7675006 |
attgagagatgaaattgttgtcataggacgaacattgacactacttaaatgtccataagcttcaaatgcaattaccatttggtctttgttgtcatgttgt |
7674907 |
T |
|
| Q |
186 |
tttttgttccaaaaaggcaagccattatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttccattaagtgcattgcatatatac |
285 |
Q |
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|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7674906 |
tttttgttccaaaagggcatgccattatttcttgccttatgaaccattgttatggctgaaggtctttctcagagttccattaagtgcattgcatatatac |
7674807 |
T |
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| Q |
286 |
ataactttcctcgctttcgtgttcctct |
313 |
Q |
| |
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| |||||||||||||||||||||||||| |
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| T |
7674806 |
acaactttcctcgctttcgtgttcctct |
7674779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 86 - 313
Target Start/End: Original strand, 36613439 - 36613666
Alignment:
| Q |
86 |
attgagagatgaaattgctgtcatactacgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtctttgctgtcatgttgt |
185 |
Q |
| |
|
||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
36613439 |
attgagagatgaaattgttgtcacaggacgaacattgacactacttaaatgtccataagcttcaaatgcaattaccatttggtctttgttgtcatgttgt |
36613538 |
T |
|
| Q |
186 |
tttttgttccaaaaaggcaagccattatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttccattaagtgcattgcatatatac |
285 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36613539 |
tttttgttccaaaagggcatgccattatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttccattaagtgcattgcatatatac |
36613638 |
T |
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| Q |
286 |
ataactttcctcgctttcgtgttcctct |
313 |
Q |
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| |||||||||||||||||||||||||| |
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| T |
36613639 |
acaactttcctcgctttcgtgttcctct |
36613666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 86 - 313
Target Start/End: Original strand, 25523662 - 25523889
Alignment:
| Q |
86 |
attgagagatgaaattgctgtcatactacgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtctttgctgtcatgttgt |
185 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
25523662 |
attgagagatgaaattgttgtcataggacgaacaatgacactacttaaatgtccataagcttcaaatgcaattaccatttggtcttttttgtcatgttgt |
25523761 |
T |
|
| Q |
186 |
tttttgttccaaaaaggcaagccattatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttccattaagtgcattgcatatatac |
285 |
Q |
| |
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|||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25523762 |
tttttgttccaaaagggcatgccaatatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttctattaagtgcattgcatatatac |
25523861 |
T |
|
| Q |
286 |
ataactttcctcgctttcgtgttcctct |
313 |
Q |
| |
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| ||||||||| |||||||||||||||| |
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|
| T |
25523862 |
acaactttccttgctttcgtgttcctct |
25523889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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