View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4954_high_12 (Length: 312)

Name: NF4954_high_12
Description: NF4954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4954_high_12
NF4954_high_12
[»] chr1 (1 HSPs)
chr1 (7-312)||(13752069-13752374)


Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 7 - 312
Target Start/End: Original strand, 13752069 - 13752374
Alignment:
Q  7 tttggtgttaactgcatcaagcaatcatcgccaacaggcaatataggccacttagnnnnnnnnnnnngatcctcacaatattctttcagataattccata 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||    
T  13752069 tttggtgttaactgcatcaagcaatcatcgccaacaggcaatataggccacttagaaaaaataaaaagatcctcacaatattctttcagataattccata 13752168  T
Q  107 gtagttgcagccattctaaacttggttggccatgaataccaggagtccaacttacttgtgaagcatgttgccactctacaggaagtaatttcactagaag 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13752169 gtagttgcagccattctaaacttggttggccatgaataccaggagtccaacttacttgtgaagcatgttgccactctacaggaagtaatttcactagaag 13752268  T
Q  207 tttctcaagcaattggcatgacaagaaagaaatatttgtactatctgcttgtgcaatgtaacaaagttttctatgaacttcttcgggaataacattaatc 306  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13752269 tttctcaagcaattggcatgacaagaaagaaatatttgtgctatctgcttgtgcaatgtaacaaagttttctatgaacttcttcgggaataacattaatc 13752368  T
Q  307 acaagt 312  Q
    ||||||    
T  13752369 acaagt 13752374  T

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